View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11436_low_65 (Length: 217)

Name: NF11436_low_65
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11436_low_65
NF11436_low_65
[»] chr8 (3 HSPs)
chr8 (1-217)||(4049763-4049978)
chr8 (149-206)||(24326106-24326163)
chr8 (144-196)||(9700086-9700138)
[»] chr3 (2 HSPs)
chr3 (136-206)||(22667478-22667548)
chr3 (136-206)||(22724117-22724187)
[»] chr7 (2 HSPs)
chr7 (144-191)||(8094396-8094443)
chr7 (143-206)||(30496780-30496843)
[»] chr1 (1 HSPs)
chr1 (144-206)||(32515374-32515436)
[»] chr5 (1 HSPs)
chr5 (149-205)||(17259293-17259349)
[»] chr2 (1 HSPs)
chr2 (137-205)||(25609872-25609940)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4049978 - 4049763
Alignment:
Q  1 agctagagcaggataaggtatagaactgattttccaaatatttcttttaagagtgtgaatccctatttttgatctagtatattgtgtttgacaaatttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4049978 agctagagcaggataaggtatagaactgattttccaaatatttcttt-aagagtgtgaatcactatttttgatctagtatattgtgtttgacaaatttca 4049880  T
Q  101 ttctcaaattcattttaagtttgcacctgttctttgattggcctattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatgg 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  4049879 ttttcaaattcattttaagtttgcacctgttctttgattggcctattcgagcttatctagtatcataagcacttgtgagactacttgagagtgcttatgg 4049780  T
Q  201 aaacagatatacatgtc 217  Q
    |||||||||||||||||    
T  4049779 aaacagatatacatgtc 4049763  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 24326163 - 24326106
Alignment:
Q  149 gagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacag 206  Q
    |||||||||||||  | |||||||||||||||||  ||| ||| ||||||||||||||    
T  24326163 gagcttatctactggcataagcacttgtgagactgtttgggagagcttatggaaacag 24326106  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 9700138 - 9700086
Alignment:
Q  144 tattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgctt 196  Q
    |||| |||||||||||||| | ||| |||||||||||||| ||||||| ||||    
T  9700138 tatttgagcttatctactagcataaacacttgtgagactatttgagagagctt 9700086  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 22667548 - 22667478
Alignment:
Q  136 gattggcctattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacag 206  Q
    ||||||| |||| |||||||||||||  | |||||||||||||||||  ||||||| | ||||||||||||    
T  22667548 gattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacag 22667478  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 22724187 - 22724117
Alignment:
Q  136 gattggcctattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacag 206  Q
    ||||||| |||| |||||||||||||  | |||||||||||||||||  ||||||| | ||||||||||||    
T  22724187 gattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacag 22724117  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 8094443 - 8094396
Alignment:
Q  144 tattcgagcttatctactatcgtaagcacttgtgagactacttgagag 191  Q
    |||| |||||||||||||| | |||||||||||||||||| |||||||    
T  8094443 tatttgagcttatctactagcataagcacttgtgagactatttgagag 8094396  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 30496843 - 30496780
Alignment:
Q  143 ctattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacag 206  Q
    ||||| ||| |||||||||| | ||||| |||| ||||||||||||||| ||||||| ||||||    
T  30496843 ctatttgagtttatctactagcataagcccttgcgagactacttgagagagcttatgaaaacag 30496780  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 32515374 - 32515436
Alignment:
Q  144 tattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacag 206  Q
    |||| ||| |||||||||| | |||||||||||||||||  ||| ||| ||||||||||||||    
T  32515374 tatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacag 32515436  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 17259349 - 17259293
Alignment:
Q  149 gagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaaca 205  Q
    |||||||||||||| | |||||||||||||||||  ||||| | |||| ||||||||    
T  17259349 gagcttatctactaacataagcacttgtgagacttgttgagtgagcttttggaaaca 17259293  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 25609940 - 25609872
Alignment:
Q  137 attggcctattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaaca 205  Q
    |||||| |||| |||||||||||||| | |||| |||||||||||| ||||  |  |||||||||||||    
T  25609940 attggcttatttgagcttatctactaacataagaacttgtgagactgcttggaatagcttatggaaaca 25609872  T

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