View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_7 (Length: 609)
Name: NF11436_low_7
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 30995487 - 30994894
Alignment:
| Q |
1 |
agagtgatctgaatcaaatggctgctgtggcagacattgttgaccattttcaatggagagatgtgatagcaattttcatagatgatgatcatggaagaaa |
100 |
Q |
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| T |
30995487 |
agagtgatctgaatcaaatggctgctgtggcagacattgttgaccattttcaatggagagatgtgatagcaattttcatagatgatgatcatggaagaaa |
30995388 |
T |
|
| Q |
101 |
tgggatagctgcattaggtgataagctagcagagaaacatagtaaaatatcatataaagcagctcttagacctgatcaactcaccactgatgaaataaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30995387 |
tgggatagctgcattaggtgataagctagcagagaaacatagtaaaatatcatataaagcagctcttagacctgatcaactcaccactgatgaaataaac |
30995288 |
T |
|
| Q |
201 |
aatgctttatttaaagtagctttgatggagtctagagtaattgtccttcatgtaacccttcattttggtctacaagtacttcacttggctcaatcacatg |
300 |
Q |
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| T |
30995287 |
aatgcattatttaaggtagctttgatggagtctagagtaattgtccttcatgtaacccttcattttggtctacaagtacttcacttggctcaatcacatg |
30995188 |
T |
|
| Q |
301 |
aaatgatgggaagtggttatgcatggatagccactgattggctttctacgatactagattccgatccttcgttgtccacatctgcagcgatgaatgacat |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
30995187 |
aaatgatgggaagtggttatgtatggatagccactgattggctttctacgatactagattccgatccttcgttgtccacatctgcaacaatgaatgacat |
30995088 |
T |
|
| Q |
401 |
gcaaggtgttatcaccttgaggatgtacacaccagaatcaaaaaacaaaagaaatttcacttctagatggaacagaaacctgagccataacataggttct |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30995087 |
gcaaggtgttatcaccttgaggatgtacacaccagaatcaaaaaataaaagaaatttcacttctagatggaacagaaacctgagccataacataggttct |
30994988 |
T |
|
| Q |
501 |
gatcatgaccataatcatggtccttcttttggtttaaacatgtttggtttatacgcctatgacactgtttatgttcttgcttctgcactagatg |
594 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30994987 |
gatcatgaccataatcatgggccttcttttggtttaaacatgtttggtttatacgcctatgacactgtttatgttcttgcttctgcactagatg |
30994894 |
T |
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