View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_9 (Length: 577)
Name: NF11436_low_9
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 36 - 560
Target Start/End: Original strand, 3701379 - 3701903
Alignment:
| Q |
36 |
ggaaggagactttaaacaaggttgaggaaaccgactaagataatcagaagatgccaaaggagatttgtcctagtgaaagtgtggaattactttagaaagg |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3701379 |
ggaaggagactttaaacaaggttgaggaaaccgactaagataatcaaaagatgccaaaggagatttgtcctagtgaaagtgtggaataactttagaaagg |
3701478 |
T |
|
| Q |
136 |
agatactttcatagaagatgaaaactactattttgatatgctaagaatcaacacaaagaaaattaagtaacttttgccaaaggagatttgcccgatacag |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701479 |
tgatactttcatagaagatgaaaactactattttgatatgctaagaatcaacacaaagaaaattaagtaacttttgccaaaggagatttgcccgatacag |
3701578 |
T |
|
| Q |
236 |
ctgaatcttcaaacataagtaatttccagatagtagttaacaaatttgcctcttccaagattgagactcagaaactatattgccaaaggagatttgcccc |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701579 |
ctgaatcttcaaacataagtaatttccagatagtagttaacaaatttgcctcttccaagattgagactcagaaactatattgccaaaggagatttgcccc |
3701678 |
T |
|
| Q |
336 |
acggtgaagctaaacactctaccagatctatctggtattaagggagattgatcgatatcaagaatcaacaaaattttgaagttgaaatcaagaatatcat |
435 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3701679 |
acggtgaagctaaacactctaccagatctatctggtattaagggagattgatcgatatccagaatcaacaaaattttgaagttgaaatcaagaatatcat |
3701778 |
T |
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| Q |
436 |
cagaaaacaaatcaaacatatactttctgacagaacaaagtccgattcaaaacacgactgcaattgccaaaagtcgaaagagcttttaataccagatcat |
535 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701779 |
cagaaaacaaatcaaacatatactttctgacagaacaaagtccgattcaaaacacgactgcaattgccaaaagtcgaaagagcttttaataccagatcat |
3701878 |
T |
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| Q |
536 |
ttcttttgaacctgcaacaagaaga |
560 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3701879 |
ttcttttgaacctgcaacaagaaga |
3701903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 36 - 560
Target Start/End: Complemental strand, 6602162 - 6601640
Alignment:
| Q |
36 |
ggaaggagactttaaacaaggttgaggaaaccgactaagataatcagaagatgccaaaggagatttgtcctagtgaaagtgtggaattactttagaaagg |
135 |
Q |
| |
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||||||| | |||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |
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| T |
6602162 |
ggaaggaaaatttaaacaagttggaggaaaccgactaagataatcaaaagatgccaaaggagatttttcctagtgaaagtgcggaataactttagaaagg |
6602063 |
T |
|
| Q |
136 |
agatactttcatagaagatgaaaactactattttgatatgctaagaatcaacacaaagaaaattaagtaacttttgccaaaggagatttgcccgatacag |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602062 |
tgatactttcatagaagatgaaaactactattttgatatgctaagaatcaacaca--gaaaattaagtaacttttgccaaaggagatttgcccgatacag |
6601965 |
T |
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| Q |
236 |
ctgaatcttcaaacataagtaatttccagatagtagttaacaaatttgcctcttccaagattgagactcagaaactatattgccaaaggagatttgcccc |
335 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6601964 |
gtgaatcttcaaacataagtaatttccagatactagttaacaaatttgcctcttccaagattgagactcagaaactatattgccaaatgagatttgcccc |
6601865 |
T |
|
| Q |
336 |
acggtgaagctaaacactctaccagatctatctggtattaagggagattgatcgatatcaagaatcaacaaaattttgaagttgaaatcaagaatatcat |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
6601864 |
acggtgaagctaaacactctaccagatctatctggtattaagggagattgattgatatccagaatcaacaaagttttgaagttgaaatcaagaatatcat |
6601765 |
T |
|
| Q |
436 |
cagaaaacaaatcaaacatatactttctgacagaacaaagtccgattcaaaacacgactgcaattgccaaaagtcgaaagagcttttaataccagatcat |
535 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6601764 |
cagaaaacagatcaaacatatactttctgacagaagaaagtctgattcaaaacacgactgcaattgccaaaagtcgaaagagcttttaataccagatcat |
6601665 |
T |
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| Q |
536 |
ttcttttgaacctgcaacaagaaga |
560 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
6601664 |
ttcttttgaacctgcaacaagaaga |
6601640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 35439095 - 35439059
Alignment:
| Q |
189 |
caaagaaaattaagtaacttttgccaaaggagatttg |
225 |
Q |
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||||| ||||| ||||||||||||||||||||||||| |
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| T |
35439095 |
caaaggaaattcagtaacttttgccaaaggagatttg |
35439059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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