View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11437_high_2 (Length: 386)

Name: NF11437_high_2
Description: NF11437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11437_high_2
NF11437_high_2
[»] chr1 (6 HSPs)
chr1 (19-178)||(4099438-4099595)
chr1 (227-360)||(68933-69065)
chr1 (247-353)||(22023124-22023231)
chr1 (294-359)||(28108100-28108165)
chr1 (266-361)||(46878142-46878237)
chr1 (185-353)||(46915908-46916077)
[»] chr8 (6 HSPs)
chr8 (186-359)||(42456827-42457001)
chr8 (236-305)||(31645145-31645214)
chr8 (199-307)||(41581081-41581190)
chr8 (294-353)||(16677124-16677183)
chr8 (294-351)||(40832899-40832956)
chr8 (187-350)||(9780358-9780522)
[»] chr3 (7 HSPs)
chr3 (215-362)||(39028101-39028249)
chr3 (195-353)||(54524928-54525087)
chr3 (186-351)||(31984365-31984529)
chr3 (186-360)||(51380939-51381110)
chr3 (230-361)||(48723329-48723460)
chr3 (245-307)||(8029226-8029288)
chr3 (294-360)||(35442656-35442722)
[»] chr2 (8 HSPs)
chr2 (186-359)||(27249740-27249914)
chr2 (211-325)||(29923867-29923982)
chr2 (208-361)||(5357571-5357725)
chr2 (187-360)||(11915371-11915545)
chr2 (186-359)||(25271727-25271901)
chr2 (294-350)||(29699591-29699647)
chr2 (295-350)||(12037297-12037352)
chr2 (214-275)||(3848123-3848187)
[»] chr4 (7 HSPs)
chr4 (186-353)||(21512005-21512173)
chr4 (250-359)||(18489601-18489710)
chr4 (229-364)||(12868406-12868541)
chr4 (186-359)||(24699348-24699522)
chr4 (208-359)||(9672096-9672248)
chr4 (229-278)||(26591215-26591264)
chr4 (186-353)||(43148851-43149017)
[»] chr6 (7 HSPs)
chr6 (201-359)||(33629344-33629502)
chr6 (204-359)||(21610999-21611155)
chr6 (186-358)||(2285561-2285734)
chr6 (186-353)||(27176950-27177118)
chr6 (216-318)||(10498132-10498235)
chr6 (186-279)||(33900099-33900193)
chr6 (186-288)||(20772110-20772212)
[»] chr5 (3 HSPs)
chr5 (186-353)||(10315701-10315869)
chr5 (187-279)||(9379268-9379361)
chr5 (312-353)||(37283768-37283809)
[»] chr7 (2 HSPs)
chr7 (208-359)||(2729808-2729955)
chr7 (276-353)||(5897634-5897711)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 4099595 - 4099438
Alignment:
Q  19 caaaatcctctatttttggattttataatccatccaaaaatggtttatgagaaggtagggtgtgaaaagaaatttccatgaagatattgtattcctaccg 118  Q
    ||||||||||||||||||||||||| ||||||   ||| |  |||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||    
T  4099595 caaaatcctctatttttggattttaaaatccaa--aaatagagtttatgagaagttagggtgtgaaaagaaatttcgataaagatattgtattcctaccg 4099498  T
Q  119 aaaagaaaatgaaggcccaagccaaagc-tttggtggcctatcacttgtgtcttgcttgaa 178  Q
    |||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||    
T  4099497 aaaagaaaatgaaggcccaagccaaaacctttggtg-cctatcacttgtgtcttgcttgaa 4099438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 227 - 360
Target Start/End: Original strand, 68933 - 69065
Alignment:
Q  227 agaaaaaacgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaattaaatgctgatgaggttatatttgttaattactagtgtttc 326  Q
    |||||| |||||||||   ||||||||||||||| || |||||||||||||||| || |||| | | ||||| ||||||||  | |||||||||||| ||    
T  68933 agaaaagacgtaaatgtctatcgacagttaactgtcgtcggttaaaattcatca-cacttaactaccgatgatgttatattgataaattactagtgtgtc 69031  T
Q  327 ctggcattaagtgaagtgtgaacaacactcttca 360  Q
    || ||||| |||||||||||||||||| ||||||    
T  69032 ctagcattgagtgaagtgtgaacaacattcttca 69065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 22023231 - 22023124
Alignment:
Q  247 tcgacagttaactgccggcggttaaaattc-atcagcaattaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgt 345  Q
    |||||||||||||| || ||||||||| || ||| ||| |||| ||| |||||||||||||  || ||||||| |||||| |  ||||| ||||||||||    
T  22023231 tcgacagttaactgtcgtcggttaaaaatccatcggcagttaactgccgatgaggttatataggtaaattactggtgttttccagcattgagtgaagtgt 22023132  T
Q  346 gaacaaca 353  Q
    ||||||||    
T  22023131 gaacaaca 22023124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 28108165 - 28108100
Alignment:
Q  294 gatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactcttc 359  Q
    ||||| |||||||| || ||||||||||||||||| | | | |||||||||||||||||| |||||    
T  28108165 gatgaagttatattggtaaattactagtgtttcctagtactgagtgaagtgtgaacaacattcttc 28108100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 361
Target Start/End: Complemental strand, 46878237 - 46878142
Alignment:
Q  266 ggttaaaattcatcagcaattaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactcttcaa 361  Q
    ||||||||||||||   | |||| ||| ||| || |||||||| | ||||| | ||||||||| ||||| ||||||||||||| | ||||||||||    
T  46878237 ggttaaaattcatcgatagttaactgccgataagattatatttataaattattggtgtttcctagcattgagtgaagtgtgaagagcactcttcaa 46878142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 353
Target Start/End: Original strand, 46915908 - 46916077
Alignment:
Q  185 ggaaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaaa--cgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagc 282  Q
    ||||||||| |||||| |||| ||  ||||||||||| || || ||||||  |||||||| |||||||||||||||||    || || |||| |||| ||    
T  46915908 ggaaaattgttgtatatacttcaactaaggctgaaacacaccaaaaaaaagacgtaaatgttcatcgacagttaactgttttcgattgaaatccatctgc 46916007  T
Q  283 aattaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaaca 353  Q
    | |||| ||| |||||   |||||| || ||||||| |||||||||  |||  |||||| |||||||||||    
T  46916008 agttaactgccgatga-aatatattggtaaattactggtgtttcctatcatcgagtgaaatgtgaacaaca 46916077  T

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Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 186 - 359
Target Start/End: Original strand, 42456827 - 42457001
Alignment:
Q  186 gaaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaa 284  Q
    ||||||||||||||||||||  |||||||||||||  ||||||||||| |||||| ||  |||||||| |||||| ||| |||||||||| ||||| ||     
T  42456827 gaaaattgctgtatacacttctaacaaggctgaaatacatcagaaaaagacgtaattgtccatcgacaattaactaccgtcggttaaaatccatcaacag 42456926  T
Q  285 ttaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactcttc 359  Q
     ||| | | |||||||||||||| || ||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  42456927 ctaattaccgatgaggttatattggtaaattactggtgtttcctagcattaagtgaagtgtgaacaacattcttc 42457001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 31645214 - 31645145
Alignment:
Q  236 gtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaattaaatgctgatgaggttata 305  Q
    |||||||  ||||| ||||||||||||| |||||||||| |||| ||| |||| ||| ||||||||||||    
T  31645214 gtaaatgaccatcggcagttaactgccgtcggttaaaatccatcggcagttaagtgccgatgaggttata 31645145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 41581190 - 41581081
Alignment:
Q  199 tacactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaattaaatgctgatg 297  Q
    ||||||| ||||||||||||||| ||  ||||||| |||||||||  ||||||||||||| || ||  | |||||||||||| | | |||| || |||||    
T  41581190 tacacttcaaacaaggctgaaacacactagaaaaagacgtaaatgtccatcgacagttaagtgtcgtagattaaaattcatcggtagttaactgttgatg 41581091  T
Q  298 aggttatatt 307  Q
    | ||||||||    
T  41581090 aagttatatt 41581081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 353
Target Start/End: Original strand, 16677124 - 16677183
Alignment:
Q  294 gatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaaca 353  Q
    ||||||||||| |  || ||||||| ||||||||| ||||| ||||||||||||||||||    
T  16677124 gatgaggttatgtaggtaaattactggtgtttcctagcattgagtgaagtgtgaacaaca 16677183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 40832956 - 40832899
Alignment:
Q  294 gatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaa 351  Q
    |||||||||||||| || |||||||||| ||||||   ||| ||||||||||||||||    
T  40832956 gatgaggttatattggtaaattactagtatttcctaatatttagtgaagtgtgaacaa 40832899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 350
Target Start/End: Complemental strand, 9780522 - 9780358
Alignment:
Q  187 aaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaat 285  Q
    ||||||| ||||||||||| ||  ||| |||||||  | |||||||| |  |||||  |||||  |||||||||| || ||||||||||||||| ||| |    
T  9780522 aaaattgatgtatacacttcaactaagactgaaacataccagaaaaagatataaatattcatcagcagttaactgtcgtcggttaaaattcatcggcagt 9780423  T
Q  286 taaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaaca 350  Q
    ||| |   ||||| ||||||||  | |||||||  | ||| || ||||| |||||||||||||||    
T  9780422 taactatcgatgatgttatattgataaattacttatattttctagcattgagtgaagtgtgaaca 9780358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 362
Target Start/End: Complemental strand, 39028249 - 39028101
Alignment:
Q  215 ctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaattaaatgctgatgaggttatatttgttaa 313  Q
    ||||||| || |||||||| ||||||||| |||||| ||||||||||||| |||||||||||||||  || |||| ||| ||| ||||||||||||| ||    
T  39028249 ctgaaacacaccagaaaaagacgtaaatgttcatcggcagttaactgccgccggttaaaattcatcgacagttaattgccgataaggttatatttgtaaa 39028150  T
Q  314 ttactagtgtttcctggcattaagtgaagtgtgaacaacactcttcaaa 362  Q
    |||||||||||| || ||||| | |||||||||||||||| ||||||||    
T  39028149 ttactagtgttttctagcattgattgaagtgtgaacaacattcttcaaa 39028101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 353
Target Start/End: Complemental strand, 54525087 - 54524928
Alignment:
Q  195 tgtatacactttaaacaaggctgaaacgcatcagaaaaaa-cgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaattaaatgct 293  Q
    |||||||||||  || ||||||||||| || ||||||||| ||||||||   || | ||||||||||||| |||||||| | ||||| || |||| |||     
T  54525087 tgtatacacttctaagaaggctgaaacacaccagaaaaaatcgtaaatgtctattggcagttaactgccgccggttaaattccatcaacagttaactgcc 54524988  T
Q  294 gatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaaca 353  Q
    |||||||||||||| || ||| |||||| ||||||  |||| ||||||||||||||||||    
T  54524987 gatgaggttatattagtaaataactagtatttcctaacattgagtgaagtgtgaacaaca 54524928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 351
Target Start/End: Original strand, 31984365 - 31984529
Alignment:
Q  186 gaaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaaacgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaat 285  Q
    ||||||| |||| ||||||| |||||||| |||||   | |||||||||| ||||||  ||||  ||||||||||||| ||||||||||||||| ||  |    
T  31984365 gaaaattactgtttacacttcaaacaaggttgaaatataccagaaaaaacataaatgtccatcagcagttaactgccgccggttaaaattcatcggcggt 31984464  T
Q  286 taaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaa 351  Q
    ||| |||  |||| ||||||||||| ||||| | ||||||||| ||||| |||||||| |||||||    
T  31984465 taactgcctatgatgttatatttgtaaatta-tggtgtttcctagcattgagtgaagtttgaacaa 31984529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 186 - 360
Target Start/End: Complemental strand, 51381110 - 51380939
Alignment:
Q  186 gaaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaa 284  Q
    ||||||||| || ||||||| ||||||||||||||| || |||||||| ||||||| |  |||    |||||||||||| | |||||||| ||||  |      
T  51381110 gaaaattgccgtttacacttcaaacaaggctgaaacacaccagaaaaagacgtaaacgcccat----agttaactgccgccagttaaaatccatcgactg 51381015  T
Q  285 ttaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactcttca 360  Q
    |||| | | ||||| ||||||||  | ||||||||||||||||| ||||| |||||||||||||||||| ||||||    
T  51381014 ttaactaccgatgatgttatattgataaattactagtgtttcctagcattgagtgaagtgtgaacaacattcttca 51380939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 361
Target Start/End: Complemental strand, 48723460 - 48723329
Alignment:
Q  230 aaaaacgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaattaaatgctgatgaggttatatttgttaattactagtgtttcctg 329  Q
    ||||| |||||||  |||| ||||||||||| || || |||||||  ||||||| |||  ||| |||||| ||||||| || |||||| |||||||| |     
T  48723460 aaaaatgtaaatgtccatcaacagttaactgtcgtcgattaaaatgtatcagcagttatctgccgatgagattatattggtaaattaccagtgtttcata 48723361  T
Q  330 gcattaagtgaagtgtgaacaacactcttcaa 361  Q
    ||||| |||||||||||||||||| |||||||    
T  48723360 gcattgagtgaagtgtgaacaacattcttcaa 48723329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 8029226 - 8029288
Alignment:
Q  245 catcgacagttaactgccggcggttaaaattcatcagcaattaaatgctgatgaggttatatt 307  Q
    ||||| |||||||||| || ||||||||| ||||| ||| |||| ||| ||||||||||||||    
T  8029226 catcggcagttaactgtcgtcggttaaaactcatcggcagttaattgccgatgaggttatatt 8029288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 35442722 - 35442656
Alignment:
Q  294 gatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactcttca 360  Q
    |||||||||| ||| || |||||  ||||||| || ||||| |||||||||||||||||| ||||||    
T  35442722 gatgaggttacattggtaaattatcagtgttttctagcattgagtgaagtgtgaacaacattcttca 35442656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 186 - 359
Target Start/End: Original strand, 27249740 - 27249914
Alignment:
Q  186 gaaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaa 284  Q
    |||||||| ||||||||||| ||||||||||||||| || | |||||| | |||||||  ||||| ||||||||||||| | |||||||| |||| |       
T  27249740 gaaaattgttgtatacacttcaaacaaggctgaaacacaccggaaaaagatgtaaatgtccatcggcagttaactgccgcctgttaaaatccatcggtgg 27249839  T
Q  285 ttaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactcttc 359  Q
    |||| || |||||| ||||||||  | |||||||||||||||||  |||| |||||||||||||||||| |||||    
T  27249840 ttaactgatgatgaagttatattgataaattactagtgtttcctaacattgagtgaagtgtgaacaacattcttc 27249914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 211 - 325
Target Start/End: Original strand, 29923867 - 29923982
Alignment:
Q  211 aaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaattaaatgctgatgaggttatatttg 309  Q
    ||||||||||| || |||||||| || |||||| | |||||||||||||||||| |||||||||| ||||||||||||| ||| |||||||||||||| |    
T  29923867 aaggctgaaacacaacagaaaaagacataaatgtttatcgacagttaactgccgccggttaaaatccatcagcaattaactgccgatgaggttatattag 29923966  T
Q  310 ttaattactagtgttt 325  Q
    | ||||||| ||||||    
T  29923967 taaattactggtgttt 29923982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 208 - 361
Target Start/End: Original strand, 5357571 - 5357725
Alignment:
Q  208 aacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaattaaatgctgatgaggttatat 306  Q
    |||||||||||||| ||  ||||||| |||||||||  ||||||||||||||||  | |||||||| | ||||  || |||| ||| |||||||||||||    
T  5357571 aacaaggctgaaacacactagaaaaagacgtaaatgtccatcgacagttaactgttgccggttaaattccatcgacagttaactgccgatgaggttatat 5357670  T
Q  307 ttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactcttcaa 361  Q
    | || ||||||||||||||     |||| |||||||||||||||||| |||||||    
T  5357671 tggtaaattactagtgtttttcaacattgagtgaagtgtgaacaacattcttcaa 5357725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 360
Target Start/End: Original strand, 11915371 - 11915545
Alignment:
Q  187 aaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaaac-gtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaat 285  Q
    ||||||| |||| ||||||  |||||| ||||||| || |||||||||  ||||||| |||||||||||||||| | | |||||||||| ||||| | ||    
T  11915371 aaaattggtgtacacacttctaacaagactgaaacacaccagaaaaaaatgtaaatgttcatcgacagttaactactgccggttaaaatccatcaacgat 11915470  T
Q  286 taaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactcttca 360  Q
    ||| |||  || || |||||||| | ||||| ||||||||  |  |||| |||||| ||||||||||| ||||||    
T  11915471 taactgccaataagattatatttataaattattagtgttttttatcattgagtgaaatgtgaacaacattcttca 11915545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 359
Target Start/End: Complemental strand, 25271901 - 25271727
Alignment:
Q  186 gaaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtc-atcgacagttaactgccggcggttaaaattcatcagca 283  Q
    |||||||| ||| ||||||| ||||||||||||||| ||||||||||| ||||||| |||| |||| | |||||||||||  | |||||||||||| |||    
T  25271901 gaaaattgttgtttacacttcaaacaaggctgaaacacatcagaaaaagacgtaaa-ggtctatcggcggttaactgccgctgtttaaaattcatcggca 25271803  T
Q  284 attaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactcttc 359  Q
     |||| | | ||  | |||||||   | |||||||||||||| ||   ||  |||||||||||||||||| |||||    
T  25271802 gttaactaccgacaaagttatatgaataaattactagtgttttctaatatcgagtgaagtgtgaacaacattcttc 25271727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 29699591 - 29699647
Alignment:
Q  294 gatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaaca 350  Q
    |||||||||||||| || |||||||||||||||||  |||| |||||||||||||||    
T  29699591 gatgaggttatattggtaaattactagtgtttcctaacattgagtgaagtgtgaaca 29699647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 350
Target Start/End: Complemental strand, 12037352 - 12037297
Alignment:
Q  295 atgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaaca 350  Q
    |||||||||||||  | ||||||| ||||||||| ||||| |||||||||||||||    
T  12037352 atgaggttatattgataaattactggtgtttcctagcattgagtgaagtgtgaaca 12037297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 3848187 - 3848123
Alignment:
Q  214 gctgaaacgcatcagaaaaa-acgtaaatggtcatcgacag--ttaactgccggcggttaaaatt 275  Q
    |||||||| ||||||||||| || |||||| ||||||||||  |||||||||| |||||||||||    
T  3848187 gctgaaacacatcagaaaaagacataaatgttcatcgacagagttaactgccgccggttaaaatt 3848123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 186 - 353
Target Start/End: Complemental strand, 21512173 - 21512005
Alignment:
Q  186 gaaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaa 284  Q
    |||||||| |||  ||||||||||||||| |||||| || |||||||| |||||||||  ||||  ||||||||||| | ||||||||||| |||| ||     
T  21512173 gaaaattgttgttgacactttaaacaaggatgaaacacaccagaaaaagacgtaaatgtccatcagcagttaactgcagccggttaaaattgatcaacag 21512074  T
Q  285 ttaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaaca 353  Q
    |||| ||| ||| | ||||||||  | ||||| ||||||||||| ||||| ||||||||||||||||||    
T  21512073 ttaactgccgataaagttatattgataaattagtagtgtttcctagcattgagtgaagtgtgaacaaca 21512005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 359
Target Start/End: Complemental strand, 18489710 - 18489601
Alignment:
Q  250 acagttaactgccggcggttaaaattcatcagcaattaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaac 349  Q
    |||||||||||||| |||||||||| |||||||| |||| ||| |||||  ||||||| || ||||||||||||||| |  |||| |||||||| |||||    
T  18489710 acagttaactgccgtcggttaaaatccatcagcagttaactgccgatgaaattatattggtaaattactagtgtttcttaacattgagtgaagtatgaac 18489611  T
Q  350 aacactcttc 359  Q
    |||| |||||    
T  18489610 aacattcttc 18489601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 364
Target Start/End: Complemental strand, 12868541 - 12868406
Alignment:
Q  229 aaaaaacgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaattaaatgctgatgaggttatatttgttaattactagtgtttcct 328  Q
    |||| ||||| ||| | ||||||||||||||| || ||||| ||||||||| | | |||| || ||||||| |||||||  | |||||||| ||||| ||    
T  12868541 aaaacacgtacatgtttatcgacagttaactgtcgtcggtttaaattcatcggtagttaactgatgatgagattatattgataaattactaatgttttct 12868442  T
Q  329 ggcattaagtgaagtgtgaacaacactcttcaaaca 364  Q
      |||| |||||||||||||||||| ||||||||||    
T  12868441 aacattgagtgaagtgtgaacaacattcttcaaaca 12868406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 359
Target Start/End: Original strand, 24699348 - 24699522
Alignment:
Q  186 gaaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaa 284  Q
    |||||||| ||| |||| || ||||| |||| ||||  | |||||||| |||||||||  ||||| ||||||||||||| | |||||||| |||| |||     
T  24699348 gaaaattgttgtttacaattcaaacagggctaaaacataccagaaaaagacgtaaatgtccatcgccagttaactgccgccagttaaaatccatcggcag 24699447  T
Q  285 ttaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactcttc 359  Q
    |||| | | ||||| ||||| ||  | ||||||||||||||||| | ||| | ||||||||||| |||| |||||    
T  24699448 ttaactaccgatgatgttatgttgataaattactagtgtttcctagaattgattgaagtgtgaagaacattcttc 24699522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 359
Target Start/End: Complemental strand, 9672248 - 9672096
Alignment:
Q  208 aacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaattaaatgctgatgaggttatat 306  Q
    ||||| |||||||| ||||||||||| ||| |||||  |||||  ||||||||| || |||||||||| |||   |  |||| ||| ||||| |||||||    
T  9672248 aacaatgctgaaacacatcagaaaaagacgaaaatgcccatcggtagttaactgtcgtcggttaaaatccattgactgttaactgccgatgaagttatat 9672149  T
Q  307 ttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactcttc 359  Q
    | |  |||||| | | |||||| |||||||||||||| ||||||||| |||||    
T  9672148 tgggaaattaccaatatttcctagcattaagtgaagtatgaacaacattcttc 9672096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 26591215 - 26591264
Alignment:
Q  229 aaaaaacgtaaatggtcatcgacagttaactgccggcggttaaaattcat 278  Q
    ||||||| |||||| ||||||| |||||||||| | ||||||||||||||    
T  26591215 aaaaaacataaatgttcatcgatagttaactgctgtcggttaaaattcat 26591264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 353
Target Start/End: Complemental strand, 43149017 - 43148851
Alignment:
Q  186 gaaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaaa-cgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaa 284  Q
    |||||||| |||||||| || ||  ||||||||||| || ||||||||| ||||||||    ||   | |||||||| | ||||| |||| ||||  |||    
T  43149017 gaaaattgttgtatacaattcaactaaggctgaaacacaccagaaaaaaacgtaaatgacattcagtatttaactgctgtcggttgaaatccatcgacaa 43148918  T
Q  285 ttaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaaca 353  Q
    |||| ||| |||||||||||||| || || |  | |||||| || ||||||| ||||||||||||||||    
T  43148917 ttaactgccgatgaggttatattggtaaaat--tggtgttttctagcattaactgaagtgtgaacaaca 43148851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 359
Target Start/End: Complemental strand, 33629502 - 33629344
Alignment:
Q  201 cactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaattaaatgctgatgag 299  Q
    |||||| |||||||||||||| ||||||||||| |||||||||   | || ||||||||||||  |||  |||||  ||||||| |||| |  |||||||    
T  33629502 cacttttaacaaggctgaaacacatcagaaaaagacgtaaatgtctagcgtcagttaactgccatcggcaaaaatcaatcagcagttaa-tattgatgag 33629404  T
Q  300 gttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactcttc 359  Q
     ||||||| || |||||||| |||||||| ||||| |||||||||||||||||| |||||    
T  33629403 attatattggtaaattactattgtttcctagcattgagtgaagtgtgaacaacattcttc 33629344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 204 - 359
Target Start/End: Complemental strand, 21611155 - 21610999
Alignment:
Q  204 tttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaattaaatgctgatgaggtt 302  Q
    |||||||| ||||||||| ||| ||||||| ||||||||| ||||||| ||||||||| || ||||||||||||||| |   |||| | | ||| | |||    
T  21611155 tttaaacatggctgaaacacattagaaaaagacgtaaatgttcatcgatagttaactgtcgtcggttaaaattcatcggttgttaactaccgataaagtt 21611056  T
Q  303 atatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactcttc 359  Q
    |||||  | |||||||||| ||| || | ||| |||||||||||||||||| |||||    
T  21611055 atattgataaattactagtattttctagtattgagtgaagtgtgaacaacattcttc 21610999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 358
Target Start/End: Original strand, 2285561 - 2285734
Alignment:
Q  186 gaaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaa 284  Q
    ||||||||||||  |||||| |||||||| |||||| ||| ||||||| |||||||||  ||||  ||||||||| | | |||||||||||||||   ||    
T  2285561 gaaaattgctgttcacacttcaaacaaggttgaaacacattagaaaaagacgtaaatgtccatcagcagttaactactgtcggttaaaattcatcgataa 2285660  T
Q  285 ttaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactctt 358  Q
    | || ||  ||||| ||||||||  | |||||  | |||||| | |||||||||||||||||||||||| ||||    
T  2285661 tcaactgtcgatgaagttatattgataaattatcaatgtttcatagcattaagtgaagtgtgaacaacattctt 2285734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 353
Target Start/End: Complemental strand, 27177118 - 27176950
Alignment:
Q  186 gaaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaa 284  Q
    |||||||| ||| ||| |||  ||||||  |||||| ||| ||||||| ||||||||| |||||||||||||||||||| || ||||||||||||   |     
T  27177118 gaaaattggtgtgtacgcttctaacaagattgaaacacattagaaaaagacgtaaatgttcatcgacagttaactgccgccgattaaaattcatcgatag 27177019  T
Q  285 ttaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaaca 353  Q
    |||| ||| ||||||||||||||  | |||||||  |||||  | | ||| |||||||||| |||||||    
T  27177018 ttaactgccgatgaggttatattaataaattactgatgttttttagtattgagtgaagtgtaaacaaca 27176950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 10498132 - 10498235
Alignment:
Q  216 tgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaattaaatgctgatgaggttatatttgttaat 314  Q
    |||||| ||||||||||| ||||||||| |||||||||||||||||||  || ||||||||||||  || |||| ||   ||||||||||||| || |||    
T  10498132 tgaaacacatcagaaaaagacgtaaatgttcatcgacagttaactgccaccgtttaaaattcatcgacagttaactgtaaatgaggttatattggtaaat 10498231  T
Q  315 tact 318  Q
    ||||    
T  10498232 tact 10498235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 279
Target Start/End: Original strand, 33900099 - 33900193
Alignment:
Q  186 gaaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatc 279  Q
    |||||||| ||| ||||||| |||||| || ||||| || |||||||| ||||||||| |||| |  |||||||||||| |||||||||||||||    
T  33900099 gaaaattgttgtttacacttcaaacaatgccgaaacacaccagaaaaagacgtaaatgctcattggtagttaactgccgccggttaaaattcatc 33900193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 20772212 - 20772110
Alignment:
Q  186 gaaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaa 284  Q
    ||||||| ||||||||||||| ||||||| |||||| || || ||||| ||||||||| | ||| ||||||| ||||| ||||||||||| ||||  |||    
T  20772212 gaaaatttctgtatacacttttaacaaggttgaaacacaccaaaaaaagacgtaaatgttaatctacagttatctgcc-gcggttaaaatccatcgacaa 20772114  T
Q  285 ttaa 288  Q
    ||||    
T  20772113 ttaa 20772110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 186 - 353
Target Start/End: Complemental strand, 10315869 - 10315701
Alignment:
Q  186 gaaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaa 284  Q
    ||||||||||||| |||||| ||  |||||||||    |||||||||| |||||||||  ||||| ||||||| |||||   ||||||||| ||| |||     
T  10315869 gaaaattgctgtagacacttcaactaaggctgaattatatcagaaaaagacgtaaatgcccatcggcagttaattgccgcgtgttaaaatttatcggcag 10315770  T
Q  285 ttaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaaca 353  Q
    |||| ||| |||||||||||||| || ||||| | |||||||   ||||| ||||||||||||||||||    
T  10315769 ttaactgccgatgaggttatattagtaaattattggtgtttctcagcattgagtgaagtgtgaacaaca 10315701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 9379361 - 9379268
Alignment:
Q  187 aaaattgctgtatacactttaaacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatc 279  Q
    ||||||||| |||||||||  || ||||||||||  || |||||||| || |||||  ||||||| | |||||||||| |||||||||||||||    
T  9379361 aaaattgctatatacacttctaagaaggctgaaatacaccagaaaaagacataaattctcatcgataattaactgccgccggttaaaattcatc 9379268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 37283768 - 37283809
Alignment:
Q  312 aattactagtgtttcctggcattaagtgaagtgtgaacaaca 353  Q
    ||||||| ||||||||| ||||| ||||||||||||||||||    
T  37283768 aattactcgtgtttcctagcattgagtgaagtgtgaacaaca 37283809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 359
Target Start/End: Original strand, 2729808 - 2729955
Alignment:
Q  208 aacaaggctgaaacgcatcagaaaaa-acgtaaatggtcatcgacagttaactgccggcggttaaaattcatcagcaattaaatgctgatgaggttatat 306  Q
    |||||||||||||| || |||||||| |||||||||  ||||| ||||||||||||  | |||||||| ||||   | ||||  |  |||||||||||||    
T  2729808 aacaaggctgaaacacaacagaaaaagacgtaaatgtccatcggcagttaactgccaccagttaaaatccatcgatagttaacagtcgatgaggttatat 2729907  T
Q  307 ttgttaattactagtgtttcctggcattaagtgaagtgtgaacaacactcttc 359  Q
    | |     |||| ||||||||| ||||| |||||||||||||||||| |||||    
T  2729908 tgg-----tactggtgtttcctagcattgagtgaagtgtgaacaacattcttc 2729955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 353
Target Start/End: Original strand, 5897634 - 5897711
Alignment:
Q  276 catcagcaattaaatgctgatgaggttatatttgttaattactagtgtttcctggcattaagtgaagtgtgaacaaca 353  Q
    ||||||||||||| ||| ||||| ||||||||  | ||||||| ||||||| | ||||  |||||| |||||||||||    
T  5897634 catcagcaattaattgccgatgaagttatattgataaattactggtgtttcttagcatcgagtgaaatgtgaacaaca 5897711  T

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