View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11437_low_1 (Length: 464)
Name: NF11437_low_1
Description: NF11437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11437_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 11 - 449
Target Start/End: Complemental strand, 3731785 - 3731349
Alignment:
| Q |
11 |
agagaaaacactaagagtaagataccctgcatgttcattagcagctaaaagacacatagcttccaccacaagtatcttggatgtcaatggagtagtaagc |
110 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731785 |
agagaaaacactaagagttagataccctgcatgttcgttagcagctaaaagacacatagcttccaccacaagtatcttggatgtcaatggagtagtaagc |
3731686 |
T |
|
| Q |
111 |
aaatttttcagtgtttcataatttatcatatggtctattaatgctgatttggttatgtggttgtattattcttctagggaatgtctaatttctcaaagcc |
210 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731685 |
aaatttttcagtgtttcataatttatcatatagtctaataatgctgatttggttatgtggttgtattattcttctagggaatgtctaatttctcaaagcc |
3731586 |
T |
|
| Q |
211 |
tgcaaggtacatcttcatggaaattcagaagattgatagcagttattatcctgaggtactttttgttgatcatagctcatgagcagatgatttggatata |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731585 |
tgcaaggtacatcttcatggaaattcagaagattgatagcagttattatcctgaggtactttttgttgatcatagctcatgagcagatgatttggatata |
3731486 |
T |
|
| Q |
311 |
tgtgacatgactgctattttaatgtgtgattaagttagattatttgataatatgacaatggttatatagttttcaaagtttacaacaataataacataaa |
410 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731485 |
tgtgacatgaatgcta--ttaatgtgtgattaagttagattatttgataatatgacaatggttatatagttttcaaagtttacaacaataataacataaa |
3731388 |
T |
|
| Q |
411 |
aagttaaagacgaattcttaaatttttattgtagtagtt |
449 |
Q |
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| T |
3731387 |
aagttaaagacgaattcttaaatttttattgtagtagtt |
3731349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 11684103 - 11683800
Alignment:
| Q |
11 |
agagaaaacactaagagtaagataccctgcatgttcattagcagctaaaagacacatagcttccaccacaagtatcttggatgtcaatggagtagtaagc |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
11684103 |
agagaaaaccctaagagtaagataccctgcatgttcattagcagccaaaagacacatagcatccaccacaagtatcttggatggcaatggagtagtaagc |
11684004 |
T |
|
| Q |
111 |
aaatttttca----gtgtttcataatttatcatatggtctattaatgctgatttggttatgtggttgtattattcttctagggaatgtctaatttctcaa |
206 |
Q |
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|||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11684003 |
aaatttttcatatagtgtttcataatttactatatggtctaataatgctgattttgttatgtgattgtattattcttctagggaatgtctaatttctcag |
11683904 |
T |
|
| Q |
207 |
agcctgcaaggtacatcttcatggaaattcagaagattgatagcagttattatcctgaggtactttttgttgatcatagctcatgagcagatgatttgga |
306 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11683903 |
agcctgcaaggtaaatcttcatggaaattcagaagattgatagcaattattatcctgaggtactttttgttgatcatagctcatgagcagatgatttggt |
11683804 |
T |
|
| Q |
307 |
tata |
310 |
Q |
| |
|
|||| |
|
|
| T |
11683803 |
tata |
11683800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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