View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11438_high_1 (Length: 611)
Name: NF11438_high_1
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 286 - 394
Target Start/End: Original strand, 21286005 - 21286113
Alignment:
| Q |
286 |
cactttgaattgattcactcatttagtgaatagattgacatcttcaaaaatgaaatataggtttatatgaagaattatttgattagaatgaataacgaaa |
385 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21286005 |
cactttgaattgattcactcatttagtaaatagattgacatcttcaaaaatgaaatataggtttatatgaagaattatttgattagaatgaataacgaaa |
21286104 |
T |
|
| Q |
386 |
cgattcatc |
394 |
Q |
| |
|
||||||||| |
|
|
| T |
21286105 |
cgattcatc |
21286113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 462 - 586
Target Start/End: Original strand, 21286111 - 21286235
Alignment:
| Q |
462 |
atccaatatttctatttataacaaatagattcactatatcctttcttctatatgaatcgattcatatgaacgannnnnnnataaaatgtaaaaattccta |
561 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21286111 |
atccaatatttctgtttacaacaaatagattcacaatatcctttcttctatatgaatcgattcatatgaacgatttttttataaaatgtaaaaattccta |
21286210 |
T |
|
| Q |
562 |
tataacccaagactttagataaaaa |
586 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
21286211 |
tataacccaagactttacataaaaa |
21286235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 21285892 - 21285976
Alignment:
| Q |
173 |
aaatgttttcaatatatacttgtaaaatatgtgggaatatatatcagaaagaatgacaatgctacatgttggtgagttttagaac |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21285892 |
aaatgttttcaatatatacttgtaaaatatgtgggaatatatataagaaagaatgacaatgctgcatgttggtgagttttagaac |
21285976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 359
Target Start/End: Complemental strand, 8422222 - 8422163
Alignment:
| Q |
300 |
tcactcatttagtgaatagattgacatcttcaaaaatgaaatataggtttatatgaagaa |
359 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||| | ||| || |||||||||| |
|
|
| T |
8422222 |
tcactcatttagtgaatagattcacaagttcaaaaatgaattctagattcatatgaagaa |
8422163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 41755036 - 41755080
Alignment:
| Q |
19 |
aacccactattgaaatccttaaatgaaaacaattcatacaatatc |
63 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
41755036 |
aacccactatcgaaatccttgaatgaaaacaattcaagcaatatc |
41755080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University