View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11438_high_11 (Length: 389)
Name: NF11438_high_11
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 49874403 - 49874763
Alignment:
| Q |
11 |
cacagaagcaaaaattttgataaaacctaaaaattcatatcattgtacttcccaatgcacaaacattcacatgacataacaaagttttctgttcaaaata |
110 |
Q |
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| T |
49874403 |
cacaaaagcaaaaattttgataaaacctaaaaattcatatcattgtacttcccaatgcacaaacattcacatgacataacaaagttttcagttcaaaata |
49874502 |
T |
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| Q |
111 |
atagtattttcagtataaaatgattaaattcaattctctgagtctaaattatttcatggaaacaaataatcaaatcatacaccatactctaaagcaaaat |
210 |
Q |
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| T |
49874503 |
atagtattttcagtataaaatgattaaattcaattctctgagtctaaattatttcatggaaacaaataatcaaatcatacaccatactctaaagcaaaat |
49874602 |
T |
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| Q |
211 |
aaagtccagaaaaccatgaccataaatttgcataccaaggggaaaacaatcgactccaactaacttgaaacaacccaaatccaaagacac-nnnnnnnnn |
309 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49874603 |
aaagtccagaaaatcatgaccataaatttgcatacgaaggggaaaacaatcaactccaactaacttgaaacaacccaaatccaaagacacaaaaaaaaaa |
49874702 |
T |
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| Q |
310 |
tgagggaataaattgataccccaccaaaagagnnnnnnntggaaagtaaagaagtttagtg |
370 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49874703 |
tgagggaataaattgataccccaccaaaagagaaaaaaatggaaagtaaagaagtttagtg |
49874763 |
T |
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