View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11438_high_13 (Length: 383)
Name: NF11438_high_13
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_high_13 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 42115785 - 42116134
Alignment:
| Q |
19 |
gagttaaccaccgatcatctcaaggaataagccttgatcctagatcgagacttaagaaccgatacgtctgatgcatataattgtagactacataattgta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42115785 |
gagttaaccaccgatcatctcaaggaataagccttgatcctagatcgagacttaagaaccgatacgtctgatgcatataa---------------ttgta |
42115869 |
T |
|
| Q |
119 |
tcattcagagtgcatgaaattcatgcagaattgtatcattagaatccaatatcattcatgcataaaattcatatataccgatggttggtagaatacaaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42115870 |
tcattcagagtgcatgaaattcatgtagaattgtatcattagaatccaatatcattcatgcataaaattcatatacaccgatggttggtagaatacaaaa |
42115969 |
T |
|
| Q |
219 |
tattcataaacggttttatggcataaaattcataaattgaacgagttcaatgtcgtgatattagaatactaatatacaaaattatgtcatgaaaacacca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42115970 |
tattcataaacggttttatggcataaaattcataaattgaacgagttcaatgtcatgatattataatactaatctacaaaattatgtcatgaaaacacca |
42116069 |
T |
|
| Q |
319 |
agatacataaacgaacaaaaaattaactattgagtttgtttgtgtgcaagttatgagtagcacct |
383 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42116070 |
agatacataaacaaacaaaaaattaactattgagtttgtttgtgtgcaagttatgagtagcacct |
42116134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University