View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11438_high_15 (Length: 336)

Name: NF11438_high_15
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11438_high_15
NF11438_high_15
[»] chr8 (3 HSPs)
chr8 (186-320)||(27513624-27513758)
chr8 (227-319)||(8675153-8675245)
chr8 (104-153)||(34154786-34154834)
[»] chr1 (2 HSPs)
chr1 (154-320)||(39210047-39210197)
chr1 (186-318)||(24036791-24036927)
[»] chr4 (2 HSPs)
chr4 (69-153)||(47952641-47952725)
chr4 (69-153)||(26594638-26594724)
[»] chr3 (2 HSPs)
chr3 (215-311)||(9461193-9461298)
chr3 (85-153)||(47594475-47594543)
[»] chr2 (1 HSPs)
chr2 (196-308)||(38950770-38950885)
[»] chr6 (2 HSPs)
chr6 (260-312)||(18331979-18332031)
chr6 (191-258)||(18331878-18331945)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 186 - 320
Target Start/End: Original strand, 27513624 - 27513758
Alignment:
Q  186 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 285  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  286 gcttgcagatagtttcatcaacttcccttgtattt 320  Q
    |||||||| ||||||||||||||||||||||||||    
T  27513724 gcttgcaggtagtttcatcaacttcccttgtattt 27513758  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 8675245 - 8675153
Alignment:
Q  227 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtatt 319  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtatt 8675153  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 34154786 - 34154834
Alignment:
Q  104 aggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 153  Q
    ||||||||| | |||||||||||||| |||||||||| ||||||||||||    
T  34154786 aggtgtagaattgtatgttgccacat-agtgtgtcaatgtatcatctctc 34154834  T

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Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 154 - 320
Target Start/End: Complemental strand, 39210197 - 39210047
Alignment:
Q  154 ttcttgtatacatcaaatggagcctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatca 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  39210197 ttcttgtatacatcaaatggaacctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttc---------- 39210108  T
Q  254 aaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattt 320  Q
          |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210107 ------aaaaaaatcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattt 39210047  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 24036791 - 24036927
Alignment:
Q  186 aatatatattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 284  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  285 ----ggcttgcagatagtttcatcaacttcccttgtat 318  Q
        |||||||||||||||||||||||||  |||||||    
T  24036890 ggatggcttgcagatagtttcatcaacttagcttgtat 24036927  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 47952641 - 47952725
Alignment:
Q  69 tatcattatttattggttttttattaggatatggaaggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 153  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47952641 tatcattatttattgtttttttattagcatatgggaggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 47952725  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 26594638 - 26594724
Alignment:
Q  69 tatcattatttattggttttttattaggatatg-ga-aggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 153  Q
    ||||||||||||||| ||||||||| | ||||| || ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  26594638 tatcattatttattgtttttttattggtatatgagagaggtgtagagtggtatgttgccacataagtgtgtccatgtatcatctctc 26594724  T

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Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 215 - 311
Target Start/End: Complemental strand, 9461298 - 9461193
Alignment:
Q  215 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 305  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  306 acttcc 311  Q
    ||||||    
T  9461198 acttcc 9461193  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 47594543 - 47594475
Alignment:
Q  85 ttttttattaggatatggaaggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 153  Q
    ||||||||| | || ||| ||||||||| ||||||||||||| ||| | |||||||||||||| |||||    
T  47594543 ttttttattggcatttgggaggtgtagaatggtatgttgccatataggggtgtcaacgtatcagctctc 47594475  T

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Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  196 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 289  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  290 gcagatagtttcatcaact 308  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
Q  260 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc 312  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc 18332031  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  191 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 258  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

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