View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11438_high_20 (Length: 298)
Name: NF11438_high_20
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 43353677 - 43353797
Alignment:
| Q |
17 |
tgaaaacaaacatgagttggatttgatttcattattgagtttatttcca-tgtggctgatagttgaggagaactgatacatacatagacacactaagctg |
115 |
Q |
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| T |
43353677 |
tgaaaacaaacatgagttggatttgatttcattattgagtttatttccactgtggctgatagttgaggagaactgatacatacatagacacactaagctg |
43353776 |
T |
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| Q |
116 |
ctggcacaccccatatgtggc |
136 |
Q |
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| T |
43353777 |
ctggcacaccccatatgtggc |
43353797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 43353829 - 43353938
Alignment:
| Q |
168 |
gtccattcaacttcaccttctctcttctatctgcacggtcatttcttttttccatttccatccacttacttccttctcttcaccaccacctacctcctcc |
267 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
43353829 |
gtccattcaacttcatcttctctcttctatctgcagagtcatttcttttttccatttccatccacttacttctttctcttcaccgccacctacctcctcc |
43353928 |
T |
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| Q |
268 |
tttctctcac |
277 |
Q |
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| T |
43353929 |
tttctctcac |
43353938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 1034543 - 1034652
Alignment:
| Q |
168 |
gtccattcaacttcaccttctctcttctatctgcacggtcatttcttttttccatttccatccacttacttccttctcttcaccaccacctacctcctcc |
267 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1034543 |
gtccattcaacttcaccttctctcttctatctgcacagtcatttcttttttccatttccatccacttacttctttctcttcaccaccacctacctcctcc |
1034642 |
T |
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| Q |
268 |
tttctctcac |
277 |
Q |
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|||||||||| |
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| T |
1034643 |
tttctctcac |
1034652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 1034470 - 1034511
Alignment:
| Q |
95 |
atacatagacacactaagctgctggcacaccccatatgtggc |
136 |
Q |
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| T |
1034470 |
atacatagacacactaagctgctggcacaacccatatgtggc |
1034511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 748085 - 748051
Alignment:
| Q |
243 |
ctcttcaccaccacctacctcctcctttctctcac |
277 |
Q |
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| T |
748085 |
ctcttcaccaccacctacctcctcctttctctcac |
748051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 30961364 - 30961398
Alignment:
| Q |
243 |
ctcttcaccaccacctacctcctcctttctctcac |
277 |
Q |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
30961364 |
ctcttcaccaccacctacctcctcctttctctcac |
30961398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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