View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11438_high_28 (Length: 226)
Name: NF11438_high_28
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_high_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 8584913 - 8584698
Alignment:
| Q |
1 |
acaaacgaagacatcaagttcatcgcgaacggaaccaatgtggaaatcaaaacccaaaatgatgatggtgttgatgatgaggaaacaattcaaaaaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8584913 |
acaaacgaagacatcaagttcattgcgaacggaaccaatgtggaaatcaaaacacaaaatgatgatggtgttgatgatgaggaaacaattcaaaaaagaa |
8584814 |
T |
|
| Q |
101 |
gatatgtgaaatttgctagccctcatgtattagctcaagttattcctaataaggatgagttacttgtgagacctaattcagttaagaaaggtaagaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8584813 |
gatatgtgaaatttgctagccctcatgtattagctcaagttattcctaataaggatgagttacttgtgagacctaattcagttaagaaaggtaagaagaa |
8584714 |
T |
|
| Q |
201 |
gacaatgatgcctttg |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8584713 |
gacaatgatgcctttg |
8584698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University