View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11438_high_4 (Length: 526)

Name: NF11438_high_4
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11438_high_4
NF11438_high_4
[»] chr4 (18 HSPs)
chr4 (1-238)||(37245899-37246136)
chr4 (2-238)||(32577096-32577331)
chr4 (5-234)||(29655717-29655945)
chr4 (13-238)||(21321430-21321655)
chr4 (1-238)||(28537834-28538069)
chr4 (5-238)||(56065532-56065765)
chr4 (5-238)||(49951216-49951449)
chr4 (2-238)||(28426099-28426322)
chr4 (2-238)||(49119448-49119671)
chr4 (36-238)||(18442227-18442429)
chr4 (1-231)||(43840353-43840584)
chr4 (1-238)||(41835358-41835595)
chr4 (1-237)||(51259576-51259813)
chr4 (1-238)||(51735019-51735255)
chr4 (1-238)||(55734912-55735149)
chr4 (1-238)||(2064756-2064993)
chr4 (2-114)||(26422650-26422762)
chr4 (1-117)||(47226377-47226493)
[»] chr5 (22 HSPs)
chr5 (2-238)||(22767305-22767541)
chr5 (1-235)||(8387992-8388226)
chr5 (1-234)||(27532953-27533187)
chr5 (5-238)||(4268002-4268235)
chr5 (5-238)||(20204858-20205091)
chr5 (1-238)||(27292337-27292574)
chr5 (1-238)||(12660219-12660456)
chr5 (1-238)||(25730711-25730948)
chr5 (1-238)||(26597504-26597741)
chr5 (1-238)||(41940784-41941021)
chr5 (1-230)||(15988796-15989025)
chr5 (1-237)||(11375560-11375796)
chr5 (36-238)||(37448028-37448230)
chr5 (1-208)||(34652301-34652507)
chr5 (243-391)||(26031480-26031626)
chr5 (143-230)||(30222988-30223075)
chr5 (253-305)||(36855265-36855318)
chr5 (253-312)||(10240701-10240761)
chr5 (1-110)||(32632546-32632655)
chr5 (407-440)||(36855354-36855387)
chr5 (348-388)||(3068081-3068121)
chr5 (198-238)||(16074639-16074679)
[»] chr7 (16 HSPs)
chr7 (2-234)||(9328650-9328881)
chr7 (5-238)||(16731836-16732069)
chr7 (5-238)||(17709970-17710203)
chr7 (1-238)||(16098393-16098630)
chr7 (1-238)||(22289144-22289381)
chr7 (1-238)||(30493657-30493893)
chr7 (1-205)||(29201002-29201208)
chr7 (32-237)||(17877312-17877517)
chr7 (46-238)||(1581518-1581711)
chr7 (36-200)||(30824557-30824720)
chr7 (5-93)||(3275082-3275170)
chr7 (113-214)||(34578437-34578538)
chr7 (407-464)||(20878260-20878316)
chr7 (407-464)||(28031464-28031520)
chr7 (348-389)||(31446949-31446990)
chr7 (407-447)||(38641382-38641422)
[»] chr8 (13 HSPs)
chr8 (1-234)||(7127130-7127363)
chr8 (1-234)||(8451170-8451403)
chr8 (1-234)||(478103-478336)
chr8 (1-238)||(23853835-23854072)
chr8 (1-207)||(185638-185842)
chr8 (2-238)||(13414926-13415162)
chr8 (2-164)||(40588778-40588940)
chr8 (1-230)||(37711990-37712214)
chr8 (35-126)||(9496797-9496887)
chr8 (407-447)||(7888558-7888598)
chr8 (1-54)||(598284-598337)
chr8 (1-89)||(3606786-3606874)
chr8 (253-312)||(20684134-20684194)
[»] chr1 (17 HSPs)
chr1 (1-238)||(25682554-25682791)
chr1 (5-238)||(44527156-44527389)
chr1 (1-233)||(36733604-36733836)
chr1 (1-221)||(48166157-48166377)
chr1 (1-238)||(48949771-48950008)
chr1 (1-238)||(51113218-51113455)
chr1 (1-238)||(4395062-4395298)
chr1 (1-234)||(52109361-52109593)
chr1 (1-238)||(5609242-5609479)
chr1 (1-238)||(16816847-16817083)
chr1 (5-127)||(44602766-44602888)
chr1 (107-237)||(24538414-24538544)
chr1 (238-388)||(22572109-22572257)
chr1 (1-51)||(2885313-2885363)
chr1 (407-465)||(8904841-8904899)
chr1 (260-312)||(8904759-8904812)
chr1 (407-472)||(14615076-14615140)
[»] chr2 (15 HSPs)
chr2 (1-238)||(88462-88699)
chr2 (1-206)||(44017365-44017570)
chr2 (1-219)||(34695951-34696167)
chr2 (1-219)||(34718363-34718579)
chr2 (5-238)||(12130689-12130922)
chr2 (38-238)||(18345571-18345770)
chr2 (57-160)||(9709910-9710013)
chr2 (1-197)||(26198637-26198822)
chr2 (1-127)||(1418028-1418154)
chr2 (2-60)||(9710036-9710094)
chr2 (1-75)||(22845602-22845676)
chr2 (1-72)||(13109916-13109987)
chr2 (3-95)||(14827126-14827218)
chr2 (331-390)||(6298926-6298985)
chr2 (259-305)||(11673478-11673525)
[»] chr6 (8 HSPs)
chr6 (1-238)||(15606041-15606278)
chr6 (1-221)||(28107059-28107279)
chr6 (1-148)||(19690926-19691073)
chr6 (5-238)||(14680062-14680298)
chr6 (3-164)||(30802040-30802201)
chr6 (1-209)||(15053222-15053430)
chr6 (1-196)||(29368103-29368296)
chr6 (1-161)||(11731716-11731873)
[»] chr3 (15 HSPs)
chr3 (1-207)||(42340324-42340530)
chr3 (1-238)||(53496935-53497172)
chr3 (1-238)||(55199414-55199651)
chr3 (50-228)||(647307-647485)
chr3 (1-96)||(647210-647305)
chr3 (1-238)||(46007204-46007439)
chr3 (89-210)||(27941129-27941250)
chr3 (32-127)||(11020258-11020353)
chr3 (5-235)||(48227319-48227550)
chr3 (66-237)||(2615397-2615568)
chr3 (1-78)||(24176833-24176910)
chr3 (406-461)||(33633710-33633765)
chr3 (1-50)||(27608950-27608999)
chr3 (1-50)||(34497419-34497468)
chr3 (265-312)||(444652-444700)
[»] scaffold0446 (1 HSPs)
scaffold0446 (5-238)||(89-322)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 8e-84; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37245899 - 37246136
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | |    
T  37245899 agacgaaagagcttgcactaaagtagcagagtcagactcgaagacaacccggtcccatctgttcacataagcaaagtgaatagcatcgagtaaggctact 37245998  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||||||||||||||||||  |||||||||||| ||||| ||| ||||||||| ||| |||||||||||||| ||||||||| | |||||||    
T  37245999 gcctccccctccaaaactgtcatatttgcccgtttccatttcgtttgtgcccgaataaatttccctcgggagtctctaacacaacatgcagaggatgtaa 37246098  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
    || | ||||||||| |||||||| ||||||||||||||    
T  37246099 gacgattacggtcatggaacgcggcatccacattgcac 37246136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 32577096 - 32577331
Alignment:
Q  2 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 101  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||| | ||||||| |||||||||| | |     
T  32577096 gacgattgagcttgcactagagtagcagagtcagactcgaagacaacccagtcccatatgtttacatcagcaaagtaaatagcagcgagtaaggctagta 32577195  T
Q  102 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 201  Q
    |||||||||||||||| |||||||||  ||||| |||||| ||||||||| |||||||||| |||||||| |||||||| ||||| ||||||||||||||    
T  32577196 cctccccctccaaaacagtcatatttgcccgttgccatttcgtttgagcccgaataaattg-ccccgggaatctctaacacaacacgcaaaagatgtaag 32577294  T
Q  202 atggttacggtcaaggaacgcgacatccacattgcac 238  Q
    ||||||| ||||| |||||||  ||||||||||||||    
T  32577295 atggttaaggtcatggaacgcagcatccacattgcac 32577331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 5 - 234
Target Start/End: Original strand, 29655717 - 29655945
Alignment:
Q  5 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 104  Q
    |||||||||||||||| ||||||  | ||||||||||||||||| |||| ||||||||||||||||||||| |||||  ||||||||||||| | |||||    
T  29655717 gatagagcttgcactagagtagcgtagtcagactcgaagacaacacggttccatctgttcacatcagcaaagtgaatgacatcgagtaaggctactgcct 29655816  T
Q  105 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 204  Q
    | ||||||||||| |||||||||  ||| | |||||||||||||||| ||||||||||||| |||||| ||||||| |||||  |||||||||||||| |    
T  29655817 ctccctccaaaacagtcatatttgcccgctgccattttgtttgagcccgaataaattgcccacgggagcctctaacacaaca-acaaaagatgtaagagg 29655915  T
Q  205 gttacggtcaaggaacgcgacatccacatt 234  Q
    |||||| ||| |||||||| ||||||||||    
T  29655916 gttacgatcatggaacgcggcatccacatt 29655945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 21321655 - 21321430
Alignment:
Q  13 ttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctcc 112  Q
    |||||||| |||||  || || |||||||||||||||||||||||||||||  |||||| ||| ||||  || ||||||||||| |||| ||||||||||    
T  21321655 ttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagaaaagtgaagggcctcgagtaaggctattgtctccccctcc 21321556  T
Q  113 aaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggt 212  Q
    |||||||||||||||  ||||| |||||| ||||||||| ||||||||| ||| || ||||||||||  ||||||||||||| ||||| |||||||||||    
T  21321555 aaaactgtcatatttgcccgttgccatttcgtttgagcccgaataaatttcccgcgagagtctctaatacaacatgcaaaagttgtaatatggttacggt 21321456  T
Q  213 caaggaacgcgacatccacattgcac 238  Q
    || ||||||| |||||||||||||||    
T  21321455 catggaacgcaacatccacattgcac 21321430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 28537834 - 28538069
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||||||||||||||||||||  || || |||| ||| ||||||||||||||||||||| ||||| |||| ||||  || ||||||||||| | |    
T  28537834 agacgatagagcttgcactaaagtagatgagtcggacttgaacacaacccggtcccatctgttcgcatcaacaaagtgaagggcctcgagtaaggctact 28537933  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||  ||||| ||||||||| ||| | |||||| ||||||||| |||||||||||||  ||||||||||||| ||||| |||||| ||||||    
T  28537934 gcctccccctc--aaactatcatattttcccgctgccatttcgtttgagcccgaataaattgcccgtgggagtctctaacacaacacgcaaaatatgtaa 28538031  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||||||||| ||| |||||||  ||||||||||||||    
T  28538032 tatggttacgatcatggaacgcagcatccacattgcac 28538069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 56065765 - 56065532
Alignment:
Q  5 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 104  Q
    ||||| |||||||||| |||||| || || |||||||||||||||||||||||| | ||| || ||||||| ||||| |||||||||||||| | |||||    
T  56065765 gatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggcatcgagtaaggcaactgcct 56065666  T
Q  105 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 204  Q
    |||||||||||||||||||||||   ||||  ||||| ||||||||| |||| |||||||| |||||||||||||  ||||| || |||||||||| |||    
T  56065665 ccccctccaaaactgtcatatttgctcgttgtcatttcgtttgagcccgaatgaattgcccacgggagtctctaaaacaacacgcgaaagatgtaatatg 56065566  T
Q  205 gttacggtcaaggaacgcgacatccacattgcac 238  Q
     | ||||||| | ||| |||||||||||||||||    
T  56065565 ttgacggtcatgaaacacgacatccacattgcac 56065532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 49951449 - 49951216
Alignment:
Q  5 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 104  Q
    |||| ||||||||||| |||||  || || |||||||||||||| |||| |||||||||| |||||||||| ||||  || ||||||||||| | |||||    
T  49951449 gataaagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcct 49951350  T
Q  105 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 204  Q
    |||||||||| ||||||||||||  ||| | |||||| ||||||||| |||||||||| || || || |||||||| || |||||||||||||||| |||    
T  49951349 ccccctccaatactgtcatatttgcccgctgccatttcgtttgagcccgaataaattggccgcgagaatctctaacacagcatgcaaaagatgtaatatg 49951250  T
Q  205 gttacggtcaaggaacgcgacatccacattgcac 238  Q
    ||| |||||| |||| ||| ||||||||||||||    
T  49951249 gttgcggtcatggaatgcggcatccacattgcac 49951216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 28426322 - 28426099
Alignment:
Q  2 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 101  Q
    |||||||||||| |||||| |||| |||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||    
T  28426322 gacgatagagctggcactagagtatcagagtcagacttgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 28426223  T
Q  102 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 201  Q
    |||||||||||||||| |||||||||  | ||| |||||| ||||||||| |||             ||| |||||||| |||||  |||||||||||||    
T  28426222 cctccccctccaaaacagtcatatttgcctgttgccatttcgtttgagcccgaa-------------ggaatctctaacacaacacacaaaagatgtaag 28426136  T
Q  202 atggttacggtcaaggaacgcgacatccacattgcac 238  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  28426135 atggttacggtcatggaacgcggcatccacattgcac 28426099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 49119448 - 49119671
Alignment:
Q  2 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 101  Q
    |||||||||||| |||||| |||| |||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||    
T  49119448 gacgatagagctggcactagagtatcagagtcagacttgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 49119547  T
Q  102 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 201  Q
    |||||||||||||||| |||||||||  | ||| |||||| ||||||||| |||             ||| |||||||| |||||  |||||||||||||    
T  49119548 cctccccctccaaaacagtcatatttgcctgttgccatttcgtttgagcccgaa-------------ggaatctctaacacaacacacaaaagatgtaag 49119634  T
Q  202 atggttacggtcaaggaacgcgacatccacattgcac 238  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  49119635 atggttacggtcatggaacgcggcatccacattgcac 49119671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 18442227 - 18442429
Alignment:
Q  36 actcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgttt 135  Q
    ||||||| | |||||||| |||||||||| || ||||||| || |  || ||||||||||| | ||||||||||||||| ||||||||||||| ||| ||    
T  18442227 actcgaaaataacccggttccatctgttcgcaacagcaaagtgtagggcctcgagtaaggctactgcctccccctccaatactgtcatattttcccgctt 18442326  T
Q  136 ccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattg 235  Q
    |||||| ||||||||| |||||||||||||  ||||||||||||| ||||| ||||||| ||||| |||||| |||||| |||||||||||||| |||||    
T  18442327 ccatttcgtttgagcccgaataaattgcccatgggagtctctaacacaacacgcaaaagttgtaatatggttgcggtcatggaacgcgacatccgcattg 18442426  T
Q  236 cac 238  Q
    |||    
T  18442427 cac 18442429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 43840353 - 43840584
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaa-ggcgat 99  Q
    ||||||||||||||||| || |||||| || ||  |||||||||||| |||||| ||| |||||||||||||||| ||||| ||||||||||| ||   |    
T  43840353 agacgatagagcttgcattagagtagctgagtcgaactcgaagacaaaccggtctcatttgttcacatcagcaaagtgaatggcatcgagtaaaggttgt 43840452  T
Q  100 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 199  Q
    || |||||||||||| |||||||||||| |||| | |||||| |||||| || |||||||||| || |||||||||||||| ||| | ||||||||||||    
T  43840453 tgtctccccctccaacactgtcatatttgtccgctgccatttcgtttgaccccgaataaattgtccacgggagtctctaacacaaaacgcaaaagatgta 43840552  T
Q  200 agatggttacggtcaaggaacgcgacatccac 231  Q
    ||||||||| | |||  ||||||| |||||||    
T  43840553 agatggttatgctcatagaacgcggcatccac 43840584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 41835358 - 41835595
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||| | |||||||| |||||  |||||  ||||||||||||||||||||||||||||  |||| ||||| ||||  |  ||||||||||| | |    
T  41835358 agacgatagcgtttgcactagagtagatgaatcgaactcgaagacaacccggtcccatctgtttgcatccgcaaaatgaagggtctcgagtaaggctact 41835457  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    || ||||||||||||||||||||||||  | | |  ||||||||||||||| |||||||||| |  || ||||||||||| ||||| ||||||| |||||    
T  41835458 gcatccccctccaaaactgtcatatttgccagctgtcattttgtttgagcccgaataaattgtctgcgagagtctctaacacaacacgcaaaagttgtaa 41835557  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||||||||| |||||||||| | ||||||||||||||    
T  41835558 tatggttacgttcaaggaacgtggcatccacattgcac 41835595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 51259576 - 51259813
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||| |||||||||| |||||| || || ||||||||||||||| ||||| | ||| || || ||||||| |||||  ||||||||||||| | |    
T  51259576 agacgatagcgcttgcactagagtagctgagtcggactcgaagacaacctggtccgaactgatcccaacagcaaagtgaatgacatcgagtaaggcaact 51259675  T
Q  101 gcctcccc-ctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 199  Q
    |||||||| |||||||||||||||||||   |||| |||||| ||||||||| |||| |||||||| || ||||||||||| |||||| | |||||||||    
T  51259676 gcctcccccctccaaaactgtcatatttgctcgttgccatttcgtttgagcccgaatgaattgcccacgagagtctctaacacaacatacgaaagatgta 51259775  T
Q  200 agatggttacggtcaaggaacgcgacatccacattgca 237  Q
    | ||| | ||||||| | |||||| |||||||||||||    
T  51259776 atatgttgacggtcatgaaacgcggcatccacattgca 51259813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 51735019 - 51735255
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| |||||  ||  | |||||||||||||| || ||| |||| |||||||||||||| ||||| |||||||||||||| | |    
T  51735019 agacgatagagcttgcactagagtagaggagcctgactcgaagacaactcg-tcctatctattcacatcagcaaagtgaatggcatcgagtaaggctact 51735117  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||||||||||||||||||   || |  ||||| |||| |||| |||||||||| |  ||| |||||||||| |||||  ||||||||||||    
T  51735118 gcctccccctccaaaactgtcatatttgcacgctgtcatttcgtttaagcccgaataaattgtcaacggaagtctctaacacaacacacaaaagatgtaa 51735217  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
    |||||||||  ||| |||||||| ||||||| ||||||    
T  51735218 gatggttacaatcatggaacgcggcatccacgttgcac 51735255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 55735149 - 55734912
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| |||||  ||||| |||||||| | |||||||| |||| ||||| || || |||| ||||  || ||||||||||| | |    
T  55735149 agacgatagagcttgcactagagtagatgaatcggactcgaaaataacccggttccatgtgttcgcaacaacaaagtgaagggcctcgagtaaggctact 55735050  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||||| ||||||||||||   || |||||||| ||||||||| ||| ||||||| |  ||||||||||||| ||||| |||||||||||||    
T  55735049 gcctccccctccaatactgtcatatttgctcgcttccatttcgtttgagcccgaacaaattgctcatgggagtctctaacacaacacgcaaaagatgtaa 55734950  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||||||  | ||| ||| |||||||||||||||||||    
T  55734949 tatggttgagatcatggagcgcgacatccacattgcac 55734912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 2064993 - 2064756
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||  ||| |||||  || || ||||| |||||||||||   |||||||||| |||||||||| ||||  || ||||||||||| | |    
T  2064993 agacgatagagcttgggctagagtagatgagtccgactcaaagacaacccgactccatctgttctcatcagcaaagtgaagggcgtcgagtaaggctact 2064894  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||| ||| ||||||||||||  ||| |  ||||||||||||||| |||||||||  || |||||||||||||| ||||| ||| | |||||||    
T  2064893 gcctcccccttcaatactgtcatatttgcccgctgtcattttgtttgagcccgaataaattatccgcgggagtctctaacacaacacgcagaggatgtaa 2064794  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||||||||||||| |||||| | | ||||||||||||    
T  2064793 tatggttacggtcatggaacgtggcgtccacattgcac 2064756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 26422650 - 26422762
Alignment:
Q  2 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 101  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||| | ||    
T  26422650 gacgatagagcttgcactagagtatcagagtcagactcgaagacaacccgatcccatctgtttacatcagcaaagtaaatagcatcgagtaaggctactg 26422749  T
Q  102 cctccccctccaa 114  Q
    |||||| ||||||    
T  26422750 cctccctctccaa 26422762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 47226377 - 47226493
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||| |||||||||  || || |||||||| ||||| || || ||||||||| |||||||||| |||| ||| ||||||||| | |||    
T  47226377 agacgatagagcttgctctaaagtagatgagtcggactcgaacacaactcgatctcatctgttcgcatcagcaaagtgaaaagcctcgagtaagactatt 47226476  T
Q  101 gcctccccctccaaaac 117  Q
     ||||||||||||||||    
T  47226477 acctccccctccaaaac 47226493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 22767305 - 22767541
Alignment:
Q  2 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 101  Q
    ||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||    
T  22767305 gacgatagagcttgcactagagtatcagagtcaaactcgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 22767404  T
Q  102 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 201  Q
    |||||||||||||||| |||||||||  ||||| |||||| ||||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  22767405 cctccccctccaaaacagtcatatttgcccgttgccatttcgtttgagcccgaataaattgcccccgggaatctctaacacaacacgcaaaagatgtaag 22767504  T
Q  202 atggttacggtcaaggaacgcgacatccacattgcac 238  Q
    ||| |||| |||| |||||||| ||||||||||||||    
T  22767505 atgattactgtcatggaacgcggcatccacattgcac 22767541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 8388226 - 8387992
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||| |||||||||| |||||| || || |||||||||||||||||||||||||||||| || | ||||| ||||| |||||||||||||| | |    
T  8388226 agacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatctgttcccaaccgcaaagtgaatggcatcgagtaaggcaact 8388127  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    ||||||||||||||||||||||||||| | |||| |||||| |||||||||||||| |||||||| || ||||||||||| ||||| || ||||||||||    
T  8388126 gcctccccctccaaaactgtcatatttgttcgttgccatttcgtttgagcctgaatgaattgcccacgagagtctctaacacaacacgcgaaagatgtaa 8388027  T
Q  201 gatggttacggtcaaggaacgcgacatccacattg 235  Q
     ||  | ||||||| | |||||| |||||||||||    
T  8388026 tattttaacggtcatgaaacgcggcatccacattg 8387992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 27532953 - 27533187
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||| ||  |||||||||| |||| | || |||||||| ||||||||||||||||| |||||||||||||| |||||  |||||| ||| || |||    
T  27532953 agacgataaagtctgcactaaagaagcaaagtcggactcgaaaacaacccggtcccatctattcacatcagcaaagtgaatgacatcgaataaagctatt 27533052  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgc-aaaagatgta 199  Q
    |||||||||||||||||||| ||||||| | | | |||||| ||||||||| ||||||||||||| |||||||||||||| ||||| || ||||||||||    
T  27533053 gcctccccctccaaaactgttatattttcctgctaccatttcgtttgagcccgaataaattgcccacgggagtctctaacacaacacgcaaaaagatgta 27533152  T
Q  200 agatggttacggtcaaggaacgcgacatccacatt 234  Q
    |  |||||||| ||| |||||||||||||||||||    
T  27533153 aactggttacgatcatggaacgcgacatccacatt 27533187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 4268235 - 4268002
Alignment:
Q  5 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 104  Q
    |||||||||||||||| |||||  || || |||||||||| |||||||||||| |||||  |||||||||| ||||  || || |||||||| | |||||    
T  4268235 gatagagcttgcactagagtagatgagtcggactcgaagaaaacccggtcccacctgttagcatcagcaaagtgaagggcctctagtaaggctactgcct 4268136  T
Q  105 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 204  Q
    |||||||||||||||||||||||  ||| | |||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||| |||    
T  4268135 ccccctccaaaactgtcatatttgcccgctgccattttgtttgagcctgaataaattgcccacgagagtctctaacacaacacgcaaaagatgtaatatg 4268036  T
Q  205 gttacggtcaaggaacgcgacatccacattgcac 238  Q
    |||||  ||||| |||||| | ||||| ||||||    
T  4268035 gttacaatcaagaaacgcggcgtccacgttgcac 4268002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 20205091 - 20204858
Alignment:
Q  5 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 104  Q
    |||||||||||||||| |||||  || || |||||||||||||| |||| |||||||||| || || |||| ||||| || ||||||||||| | |||||    
T  20205091 gatagagcttgcactagagtagatgagtcggactcgaagacaactcggttccatctgttcgcaacaacaaagtgaatggcctcgagtaaggctactgcct 20204992  T
Q  105 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 204  Q
    |||||||||| ||||||||||||  ||||| |||||| ||||||||||| ||||||| ||| |||||||||||| | ||| ||| ||||||||||| |||    
T  20204991 ccccctccaatactgtcatatttgcccgttgccatttcgtttgagcctggataaatttcccgcgggagtctctagcacaaaatgtaaaagatgtaatatg 20204892  T
Q  205 gttacggtcaaggaacgcgacatccacattgcac 238  Q
    |||| ||||| |||||||| ||||||||||||||    
T  20204891 gttatggtcatggaacgcggcatccacattgcac 20204858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27292574 - 27292337
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||||| |||||||| || ||  || ||  ||||||||||||||||||||||||||||  |||||||||| ||||  ||||| |||||||| |||    
T  27292574 agacgatagagtttgcactagagcagatgagtcgaactcgaagacaacccggtcccatctgttatcatcagcaaagtgaagggcatctagtaaggctatt 27292475  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||| ||||||  | |||||| |||| | |||||||||||||||| ||||||||||||| || ||||||||||| |||||||||||| ||||||    
T  27292474 gcctcccccttcaaaacaataatatttgtccgctgccattttgtttgagcccgaataaattgcccacgagagtctctaacacaacatgcaaaatatgtaa 27292375  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||||||||  ||| |||||| ||||||||||||||||    
T  27292374 tatggttactatcatggaacgtgacatccacattgcac 27292337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 12660456 - 12660219
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| |||||| || |||||||||| || ||| ||||| ||| ||||||||| |||||| |||||  ||||||||||| | | |    
T  12660456 agacgatagagcttgcactagagtagctgagtcagactcgacgataacacggtctcatttgttcacattagcaaagtgaatgacatcgagtaagactact 12660357  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    ||||||| ||| || ||||||||||||  ||| | |||||| ||||||||| |||||||||| ||  |  |||||||||| ||||| |||||||||||||    
T  12660356 gcctcccgctctaacactgtcatatttgcccgctgccatttcgtttgagcccgaataaattgtccatgaaagtctctaacacaacacgcaaaagatgtaa 12660257  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
    |||||||||| ||| |||||||| ||||||||||||||    
T  12660256 gatggttacgttcatggaacgcggcatccacattgcac 12660219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 25730948 - 25730711
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| |||||  || || |||||||||||||| | ||||||||||||| |||||||||| ||||  || ||||||||||| | |    
T  25730948 agacgatagagcttgcactagagtagatgagtcggactcgaagacaactcagtcccatctgttcgcatcagcaaagtgaagggcctcgagtaaggctact 25730849  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||||||||||||||||||  ||| | |||||| ||||||||  ||||||||| ||| || ||| ||||||| ||||| |  |||  |||||    
T  25730848 gcctccccctccaaaactgtcatatttgcccgctgccatttcgtttgagctcgaataaatttcccgcgtgagactctaacacaacacgtgaaaattgtaa 25730749  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||||||||||||| ||||||||  |||||||||||||    
T  25730748 tatggttacggtcatggaacgcggaatccacattgcac 25730711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 26597504 - 26597741
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||| |||||||||| |||||| || || |||||||||||||||||||| ||||| ||| || | ||||| ||||| |||||||||||||| | |    
T  26597504 agacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtctcatctattcccaactgcaaagtgaatggcatcgagtaaggcaact 26597603  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||||||| ||||||||||   |||| |||||| ||||||||| |||| ||||| || |||||||||||||| ||||| || ||||||||||    
T  26597604 gcctccccctccaaaattgtcatatttgctcgttgccatttcgtttgagcccgaatgaattgtccacgggagtctctaacacaacacgcgaaagatgtaa 26597703  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||| | | | ||| | |||||| ||||||||||||||    
T  26597704 tatgttgatgatcatgaaacgcggcatccacattgcac 26597741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 41940784 - 41941021
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||||| |||||||| |||||  || || |||||||||||||||||||||  | ||||||||| |||||| |||||  ||| ||||||||| |||    
T  41940784 agacgatagagtttgcactagagtagttgagtcggactcgaagacaacccggtccagt-tgttcacatgagcaaagtgaatgacattgagtaaggctatt 41940882  T
Q  101 gcctccccctccaaaactgtcatatttttccgt-ttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 199  Q
    | ||||||||||||||||||||||||||||  | |  ||||| ||||||||  ||||||||| ||| ||||||||| |||| | |||  |||||||||||    
T  41940883 gtctccccctccaaaactgtcatatttttctatatgtcatttcgtttgagctcgaataaatttcccacgggagtctttaacactacacacaaaagatgta 41940982  T
Q  200 agatggttacggtcaaggaacgcgacatccacattgcac 238  Q
    |||| |||||||||| |||||||| ||||||||||||||    
T  41940983 agatagttacggtcatggaacgcggcatccacattgcac 41941021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 15988796 - 15989025
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||||| |||||||| |||||| ||  | |||| ||||||||||||||||||| ||||| |||||||||| | ||  || ||||||||||  | |    
T  15988796 agacgatagagattgcactagagtagctgagacggacttgaagacaacccggtcccatatgttcgcatcagcaaagtaaagggcctcgagtaaggttact 15988895  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    ||||||||||||||||||||||||||| |||| | |||||| ||||||||| ||||||||||| | ||  ||||||| ||  |||| ||||||| |||||    
T  15988896 gcctccccctccaaaactgtcatatttgtccgctgccatttcgtttgagcccgaataaattgctcgcgaaagtctctgacataacacgcaaaagttgtaa 15988995  T
Q  201 gatggttacggtcaaggaacgcgacatcca 230  Q
     |||||| |||||| |||||||||||||||    
T  15988996 tatggttgcggtcatggaacgcgacatcca 15989025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 11375560 - 11375796
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| | |||  ||||||||||| |||||||||||||||||| | ||  |||| ||||| ||||  || ||||||||||| | |    
T  11375560 agacgatagagcttgcactagaatagatgaatcagactcaaagacaacccggtcccatatatttgcatccgcaaaatgaagggcctcgagtaaggctact 11375659  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    | |||||||||||||||||||||||||   || | |||||| ||||||| | ||||||||  ||  || ||||||||||| ||||||||||||| |||||    
T  11375660 gtctccccctccaaaactgtcatatttactcgctgccatttcgtttgagtccgaataaatcacctgcgagagtctctaacacaacatgcaaaagttgtaa 11375759  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgca 237  Q
     ||||||||| ||| |||||||  |||||||||||||    
T  11375760 tatggttacgttcatggaacgcagcatccacattgca 11375796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 37448230 - 37448028
Alignment:
Q  36 actcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgttt 135  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||  ||||||||||||| |  |||||||| | ||| |||||||| |||   || |     
T  37448230 actcgaagacaacccggttccatctgttcacatcagcaaagtgaatgacatcgagtaaggctaccgcctcccctttcaacactgtcatgtttgcacgctg 37448131  T
Q  136 ccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattg 235  Q
    |||||||||||||| | ||||| |||| || || ||||||||||| ||||||  ||| ||||||||||||||| ||||| ||||| |||||||||||| |    
T  37448130 ccattttgtttgagtccgaatacattgtccacgagagtctctaacacaacatataaacgatgtaagatggttatggtcatggaacacgacatccacatcg 37448031  T
Q  236 cac 238  Q
    |||    
T  37448030 cac 37448028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 34652301 - 34652507
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||| |||||||||||||| |||||  || || | ||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||  |||    
T  34652301 agacggtagagcttgcactagagtagtcgagtcgggctcgaagacaacccgatcccatctgttcacatcggcaaagtgaatggcatcgagtaaggttatt 34652400  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
      |||||| | ||| ||||||||||||   || | || ||||||||||| | | ||||||||||| |||||||||||||| |||||  ||||||||||||    
T  34652401 atctccccttacaacactgtcatatttgctcgctgcc-ttttgtttgagaccggataaattgcccacgggagtctctaacacaacacacaaaagatgtaa 34652499  T
Q  201 gatggtta 208  Q
    ||||||||    
T  34652500 gatggtta 34652507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 243 - 391
Target Start/End: Original strand, 26031480 - 26031626
Alignment:
Q  243 ttctgtaggtaa--gtccgaaagacaacaattttgctgtcaatttgcattatccataggtaaatgcctatttttctatggttgaaactcttatttaaacg 340  Q
    ||||||||||||  ||| ||||||||||| |||||  ||||||||||||||||||||| ||||||||||||||||| ||| | ||| |  |||||||||     
T  26031480 ttctgtaggtaaaagtctgaaagacaacagttttgtcgtcaatttgcattatccatagttaaatgcctatttttctgtgggtaaaattactatttaaacc 26031579  T
Q  341 attacttatatatttaactacaactcagttgtctgtaactataagtggtgt 391  Q
    |    |||||||||||||||||| |||||||||||||||||||||||||||    
T  26031580 a----ttatatatttaactacaattcagttgtctgtaactataagtggtgt 26031626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 30222988 - 30223075
Alignment:
Q  143 gtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatcca 230  Q
    ||||||||| |||||||||||||  || |||||||||| ||||| ||||||||||||| |||||||| |||| |||||||||| ||||    
T  30222988 gtttgagcccgaataaattgcccatggaagtctctaacacaacacgcaaaagatgtaatatggttacagtcatggaacgcgacgtcca 30223075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 36855265 - 36855318
Alignment:
Q  253 aagtccgaaagacaacaattttgctgtcaatt-tgcattatccataggtaaatg 305  Q
    ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  36855265 aagtctgaaagacagcaattttgctgtcaattatgcattattcataggtaaatg 36855318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 10240761 - 10240701
Alignment:
Q  253 aagtccgaaagacaacaattttgctgtcaatt-tgcattatccataggtaaatgcctattt 312  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||  ||||||| |||||||    
T  10240761 aagtctgaaagacagcaattttgctgtcaattatgcattatccaggggtaaatacctattt 10240701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 32632655 - 32632546
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||| ||||| |||||||||||  || |||||||| |||||||||||||   |||| |||  ||||| ||| ||||  || ||||||||||  |||    
T  32632655 agacgataaagcttacactaaagtagatgagtcagactcaaagacaacccggtttaatctattcgtatcagtaaaatgaaaggcctcgagtaaggttatt 32632556  T
Q  101 gcctccccct 110  Q
    | ||||||||    
T  32632555 gtctccccct 32632546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 440
Target Start/End: Original strand, 36855354 - 36855387
Alignment:
Q  407 ttcaattatttttaaatgaaaaaatgtcaagatt 440  Q
    ||||||||||||||||||||||| ||||||||||    
T  36855354 ttcaattatttttaaatgaaaaattgtcaagatt 36855387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 3068081 - 3068121
Alignment:
Q  348 atatatttaactacaactcagttgtctgtaactataagtgg 388  Q
    |||||||||||||||||| ||||| |||| |||||||||||    
T  3068081 atatatttaactacaacttagttgcctgtcactataagtgg 3068121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 16074679 - 16074639
Alignment:
Q  198 taagatggttacggtcaaggaacgcgacatccacattgcac 238  Q
    ||||||||||||| ||| |||||||| ||||||||||||||    
T  16074679 taagatggttacgttcatggaacgcggcatccacattgcac 16074639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 3e-71; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 9328650 - 9328881
Alignment:
Q  2 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 101  Q
    ||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||    
T  9328650 gacgatagagcttgcactagagtatcagagtcagactccaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 9328749  T
Q  102 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 201  Q
    |||||||||||||||| |||||||||| ||||| |||||| ||||||||  ||||||||||  ||||||| |||||||| ||||| ||||| ||||||||    
T  9328750 cctccccctccaaaacagtcatattttcccgttgccatttcgtttgagctcgaataaattg-tcccgggaatctctaacacaacacgcaaatgatgtaag 9328848  T
Q  202 atggttacggtcaaggaacgcgacatccacatt 234  Q
    ||||||||||||| |||||||| ||||||||||    
T  9328849 atggttacggtcatggaacgcggcatccacatt 9328881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 16732069 - 16731836
Alignment:
Q  5 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 104  Q
    |||||||||||||||| |||||  || || |||||||||||||| |||| |||||||||| |||||||| | ||||| || ||||||||||| | |||||    
T  16732069 gatagagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcagagtgaatggcctcgagtaaggctactgcct 16731970  T
Q  105 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 204  Q
    |||||||||| ||||||||||||  ||  | |||||| ||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||| |||    
T  16731969 ccccctccaatactgtcatatttgccctctgccatttcgtttgagcccgaataaattgcccgcgggaatctctaacacaacatgcaaaagatgtaatatg 16731870  T
Q  205 gttacggtcaaggaacgcgacatccacattgcac 238  Q
    ||| |||||| ||||| || ||||||||||||||    
T  16731869 gttgcggtcatggaacacggcatccacattgcac 16731836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 17710203 - 17709970
Alignment:
Q  5 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 104  Q
    |||||||||||||||| |||||  || || |||||||||||||| |||| |||||||||| |||||||| | ||||| || ||||||||||| | |||||    
T  17710203 gatagagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcagagtgaatggcctcgagtaaggctactgcct 17710104  T
Q  105 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 204  Q
    |||||||||| ||||||||||||  ||  | |||||| ||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||| |||    
T  17710103 ccccctccaatactgtcatatttgccctctgccatttcgtttgagcccgaataaattgcccgcgggaatctctaacacaacatgcaaaagatgtaatatg 17710004  T
Q  205 gttacggtcaaggaacgcgacatccacattgcac 238  Q
    ||| |||||| ||||| || ||||||||||||||    
T  17710003 gttgcggtcatggaacacggcatccacattgcac 17709970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 16098630 - 16098393
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||| ||||||| |||| |||||  || || |||||||||||||||||||||||| ||||  |||||||||||||||  || || |||||||| | |    
T  16098630 agacgatggagcttgtactagagtagatgagtcggactcgaagacaacccggtcccatttgttagcatcagcaaattgaagggcctctagtaaggctact 16098531  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
     |||| |||||||||| |||||||||| | ||||||||||| ||||||||| ||||||||||||   ||||||||||||| ||||| |||||||| ||||    
T  16098530 acctctccctccaaaattgtcatatttgttcgtttccatttcgtttgagcccgaataaattgcctatgggagtctctaacacaacacgcaaaagaagtaa 16098431  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||||||||||||| ||||||   | ||||||||||||    
T  16098430 tatggttacggtcatggaacgatgcgtccacattgcac 16098393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 22289381 - 22289144
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||| |||||||||| |||||| || || |||||||||||| ||||||||||| ||||| || | ||||| ||||| |||||||||||||| |      
T  22289381 agacgatagcgcttgcactagagtagctgagtcggactcgaagacagcccggtcccatttgttcccaacggcaaagtgaatggcatcgagtaaggcaacc 22289282  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
     ||||||||||||||||||||||||||   |||| |||||| || |||| | |||| |||||||| ||||| |||||||| ||||| || ||||||||||    
T  22289281 acctccccctccaaaactgtcatatttgctcgttgccatttcgtctgagtccgaatgaattgcccacgggaatctctaacacaacacgcgaaagatgtaa 22289182  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||| | ||||||| | |||||| ||||||||||||||    
T  22289181 tatgttgacggtcatgaaacgcggcatccacattgcac 22289144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 30493657 - 30493893
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| ||||   || || ||||||||||||||| |||| |||||||||| |||||| || ||||   |||| |||||||| | |    
T  30493657 agacgatagagcttgcactagagtaattgagtcggactcgaagacaacctggtctcatctgttcatatcagctaagtgaacgacatcaagtaaggctact 30493756  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||| ||||||||||||||| || || | | |||||| |||||||||||| ||||||||||  | || | |||||| ||||| |||||| ||||||    
T  30493757 gcctcccc-tccaaaactgtcatacttgtctgctgccatttcgtttgagcctgagtaaattgcccatgagaatttctaacacaacacgcaaaatatgtaa 30493855  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
    | ||||||| |||| |||| |||||||||| |||||||    
T  30493856 gttggttacagtcatggaatgcgacatccatattgcac 30493893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 29201002 - 29201208
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| |||||| || |||||||||||||||||||| | ||||||||||||||||||||| |||||  |||| |||||      |    
T  29201002 agacgatagagcttgcactagagtagctgagtcagactcgaagacaacccgtttccatctgttcacatcagcaaagtgaatgacatcaagtaaacatgct 29201101  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattg--cccccgggagtctctaacccaacatgcaaaagatgt 198  Q
     |||||||||||||||||||||||||| |||| |  ||||| ||||||||| ||||||| ||  | | |  ||||||||||  ||||||||||||||| |    
T  29201102 acctccccctccaaaactgtcatatttgtccgctgtcatttcgtttgagcccgaataaactggccacacatgagtctctaatacaacatgcaaaagatat 29201201  T
Q  199 aagatgg 205  Q
    || ||||    
T  29201202 aatatgg 29201208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 32 - 237
Target Start/End: Complemental strand, 17877517 - 17877312
Alignment:
Q  32 tcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttcc 131  Q
    |||||||||||||||||||| | |||||||||| |||  | ||| ||||  || | ||||||||| | | ||||||||||||| ||||||||||||  ||    
T  17877517 tcagactcgaagacaacccgattccatctgttcgcatttgtaaagtgaagggccttgagtaaggctacttcctccccctccaatactgtcatatttcccc 17877418  T
Q  132 gtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccac 231  Q
    | | | |||| ||||||||  |||| || | |||  |||||||| |||| | ||| |||| | |||||| ||||||||  ||| ||||||||||||||||    
T  17877417 gctgcgatttcgtttgagcacgaatgaacttcccatgggagtctataacgccacacgcaacaaatgtaatatggttacaatcatggaacgcgacatccac 17877318  T
Q  232 attgca 237  Q
    ||||||    
T  17877317 attgca 17877312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 238
Target Start/End: Complemental strand, 1581711 - 1581518
Alignment:
Q  46 aacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccc-tccaaaactgtcatatttttccgtttccattttgt 144  Q
    |||||| || ||||||||| |||||||||| ||||  || ||||||||||| | ||| |||||| || |||||| | ||||||  ||  | |||||| ||    
T  1581711 aacccgatctcatctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcatcccccctcaaaaactataatatttgccctctgccatttcgt 1581612  T
Q  145 ttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattgcac 238  Q
    ||||||| | ||||| |  || | |||||||||| | ||||| ||||||||||||| ||||||| ||||| |||||||  ||||||||||||||    
T  1581611 ttgagcccggataaactatccgctggagtctctagcacaacacgcaaaagatgtaatatggttatggtcatggaacgcagcatccacattgcac 1581518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 200
Target Start/End: Original strand, 30824557 - 30824720
Alignment:
Q  36 actcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccg-tt 134  Q
    |||||||||||||| | |||||||||||| ||| || ||| ||||  || ||||||||||| | |||||  |||| |||||||||||||||| |||| |     
T  30824557 actcgaagacaacctgatcccatctgttcgcattagaaaagtgaagggcctcgagtaaggctactgcct--cccttcaaaactgtcatatttatccgctg 30824654  T
Q  135 tccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    ||  |||| ||| |||| |||||||||   | ||| |||||||||| |||||||||||||||||||    
T  30824655 tctttttttttttagcccgaataaattattcgcggcagtctctaacacaacatgcaaaagatgtaa 30824720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 3275170 - 3275082
Alignment:
Q  5 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaa 93  Q
    ||||| |||||||||| |||||| || || |||||||||||||||| |||| || ||||| || ||||||| |||||||||| ||||||    
T  3275170 gatagcgcttgcactagagtagctgagtcggactcgaagacaacccagtcctatatgttcccaacagcaaagtgaatagcattgagtaa 3275082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 34578437 - 34578538
Alignment:
Q  113 aaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggt 212  Q
    |||||||||||||||   ||||  ||||| || |||||| ||||||||||||| ||||| | || ||| ||||| ||||||||||||| ||| | |||||    
T  34578437 aaaactgtcatatttgctcgttgtcatttcgtctgagcccgaataaattgcccacgggaatttcgaacacaacacgcaaaagatgtaatatgttaacggt 34578536  T
Q  213 ca 214  Q
    ||    
T  34578537 ca 34578538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 464
Target Start/End: Complemental strand, 20878316 - 20878260
Alignment:
Q  407 ttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgtcgg 464  Q
    ||||||||||||||||| |||||||||  ||||||||||| | |||| ||||||||||    
T  20878316 ttcaattatttttaaat-aaaaaatgtagagattataacgtggcctccgaattgtcgg 20878260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 464
Target Start/End: Original strand, 28031464 - 28031520
Alignment:
Q  407 ttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgtcgg 464  Q
    |||||||||||||||||| |||| |||||||||||||||| | |||| ||||| ||||    
T  28031464 ttcaattatttttaaatg-aaaattgtcaagattataacgaggcctccgaattatcgg 28031520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 31446990 - 31446949
Alignment:
Q  348 atatatttaactacaactcagttgtctgtaactataagtggt 389  Q
    |||||||||||||||||| |||||| ||| ||||||||||||    
T  31446990 atatatttaactacaacttagttgtttgtcactataagtggt 31446949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 447
Target Start/End: Original strand, 38641382 - 38641422
Alignment:
Q  407 ttcaattatttttaaatgaaaaaatgtcaagattataacgg 447  Q
    ||||||||||||||||||||| | |||||| ||||||||||    
T  38641382 ttcaattatttttaaatgaaatattgtcaaaattataacgg 38641422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7127363 - 7127130
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | |    
T  7127363 agacgaaagagcttgcactaaagtagcatagtcagactcgaaggcaacccggtcccatctgttcacatcagcaaagtgaatagcatcgagtaaggctact 7127264  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
     ||||||||||||||||| ||||||||  ||||||||||||  |||| ||  ||||||||| |||||| ||||||||||| ||||||||| | |||||||    
T  7127263 acctccccctccaaaactttcatatttgcccgtttccatttcatttgtgcacgaataaatttcccccgagagtctctaacacaacatgcagaggatgtaa 7127164  T
Q  201 gatggttacggtcaaggaacgcgacatccacatt 234  Q
    || ||||||| ||| |||||||| ||||||||||    
T  7127163 gacggttacgttcatggaacgcggcatccacatt 7127130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 8451170 - 8451403
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||| |||||||||||||||||  || |||||||||||||||||||||||||||| |||||||||||| || ||||| | ||||||||| || | |    
T  8451170 agacgataaagcttgcactaaagtagatgagtcagactcgaagacaacccggtcccatccgttcacatcagcgaagtgaatggaatcgagtaaagctact 8451269  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||||| ||||||||||||  ||| |||| ||||||||||||| |||||||||| || |  ||||||||||| |||||| ||||||||||||    
T  8451270 gcctccccctccaacactgtcatatttgcccgcttcctttttgtttgagcccgaataaattgtccacaagagtctctaacacaacatccaaaagatgtaa 8451369  T
Q  201 gatggttacggtcaaggaacgcgacatccacatt 234  Q
     ||||||||||||| |||||||| ||||||||||    
T  8451370 aatggttacggtcatggaacgcggcatccacatt 8451403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 478103 - 478336
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| ||||| ||| ||||| ||||||| ||||||||||||||| ||||||| |||||| ||||| |||||||||||||| | |    
T  478103 agacgatagagcttgcactagagtagtagagtcagattcgaagataacccggtcccatctattcacattagcaaagtgaatggcatcgagtaaggctact 478202  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||||||| | |||||||| ||  || | |||||||| |||||  |||||||||| |    
T  478203 gcctccccctccaaaactgtcatatttgcccgttgccattttgtttgagcccggataaattgaccatggaaatctctaacacaacacacaaaagatgtta 478302  T
Q  201 gatggttacggtcaaggaacgcgacatccacatt 234  Q
    |||||||  ||||| ||||||   ||||||||||    
T  478303 gatggttgtggtcatggaacgttgcatccacatt 478336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 23854072 - 23853835
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| ||| |  || || |||||||||||||| | ||| ||||||||  ||||| |||| ||||| || || |||||||| | |    
T  23854072 agacgatagagcttgcactagagttgatgagtcggactcgaagacaactcagtctcatctgttagcatcaacaaagtgaatggcctcaagtaaggctact 23853973  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    ||||| |||||||||||||||||||||||||| |  ||||| |||||| || ||||||||||||| ||||||||||||||  |||| |||||||||||||    
T  23853972 gcctcaccctccaaaactgtcatatttttccgctgtcatttcgtttgaacccgaataaattgcccacgggagtctctaacataacacgcaaaagatgtaa 23853873  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     || |||||||||| |||||||| | ||||||| ||||    
T  23853872 tatagttacggtcatggaacgcggcgtccacatcgcac 23853835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 185638 - 185842
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||||| ||||||||| |||| ||||||| |||||||||||| | |    
T  185638 agacgaaagagcttgcactaaagtagcagagtcagactcgtagacaacccggttccatctattcacatcaacaaagtgaatagtatcgagtaaggctact 185737  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
     ||| ||||||||||||||||||||||  |||||||||||| |||||||||   ||||||| ||| | ||||||||| || |||| |||| |||||||||    
T  185738 tcct-cccctccaaaactgtcatatttgcccgtttccatttcgtttgagcccagataaatttccctc-ggagtctcttacacaacgtgcagaagatgtaa 185835  T
Q  201 gatggtt 207  Q
    || ||||    
T  185836 gacggtt 185842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 13415162 - 13414926
Alignment:
Q  2 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 101  Q
    ||||||| | ||||||||| ||||| |||||| ||||| |||||||| || |||||||||||  |||| |||||  |||  || ||||||||||| | ||    
T  13415162 gacgatataccttgcactagagtagaagaatcggactcaaagacaactcgatcccatctgtttgcatccgcaaaaggaagggcctcgagtaaggctactg 13415063  T
Q  102 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 201  Q
    |||||||||||||||||||||||||| |||| | |||||| ||||||||| ||||||||||||| ||  |||||||||   ||||  |||||| |||||     
T  13415062 cctccccctccaaaactgtcatatttgtccgctgccatttcgtttgagcccgaataaattgcccgcgaaagtctctaaaaaaacacacaaaagttgtaat 13414963  T
Q  202 atggttacggtcaaggaacgcgacatccacattgcac 238  Q
    ||||||||| ||| ||||| |||||||||||||||||    
T  13414962 atggttacgttcatggaacacgacatccacattgcac 13414926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 40588778 - 40588940
Alignment:
Q  2 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 101  Q
    |||||||||| || ||||| |||||  ||||||||||| |||||||||||||| ||||||||  |||| |||||  |||  || ||||||| ||| | ||    
T  40588778 gacgatagagtttacactagagtagatgaatcagactcaaagacaacccggtctcatctgtttgcatccgcaaaacgaagggcctcgagtacggctactg 40588877  T
Q  102 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcc 164  Q
    ||||||||||||||||||| ||||||  ||| | |||||| ||||||||| ||||||||||||    
T  40588878 cctccccctccaaaactgttatatttgcccgctgccatttcgtttgagcccgaataaattgcc 40588940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 37712214 - 37711990
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||| ||||||||| ||||| ||||||||  ||| ||| ||||| |||| | || ||||||||||||||| |||| ||||| ||||    ||| || | |    
T  37712214 agacaatagagcttacactagagtagcagggtcaaactagaagataacctgatctcatctgttcacatcaacaaagtgaatggcat----taaagctact 37712119  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
     ||||||| || |||||||||||||||| ||| |  ||||| |||| |||   |||||||||||| |  |||| |||||| ||||| |||||| ||||||    
T  37712118 acctccccttc-aaaactgtcatattttcccgctgtcatttcgttttagctcaaataaattgcccacacgagtttctaacacaacacgcaaaaaatgtaa 37712020  T
Q  201 gatggttacggtcaaggaacgcgacatcca 230  Q
    |||  |||| |||| || |||| |||||||    
T  37712019 gataattacagtcatggtacgcaacatcca 37711990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 9496887 - 9496797
Alignment:
Q  35 gactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatt 126  Q
    ||||| |||||||| |||||||||  |||||||||| |||| |||||  |||| |||||||| | |||||| ||||||||||||||||||||    
T  9496887 gactcaaagacaacacggtcccata-gttcacatcaacaaagtgaatgtcatcaagtaaggctactgcctcaccctccaaaactgtcatatt 9496797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 447
Target Start/End: Original strand, 7888558 - 7888598
Alignment:
Q  407 ttcaattatttttaaatgaaaaaatgtcaagattataacgg 447  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  7888558 ttcaattatttttaaaggaaaaattgtcaagattataacgg 7888598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 598284 - 598337
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtc 54  Q
    |||||||||||||||||||| ||||||  | || |||| |||||||||||||||    
T  598284 agacgatagagcttgcactagagtagctaagtccgacttgaagacaacccggtc 598337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3606786 - 3606874
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcga 89  Q
    ||||||||||| ||| |||||||| |  || || |||| ||| |||||  ||| ||||||||||||||||  ||||||||| |||||||    
T  3606786 agacgatagagtttgtactaaagttgttgagtcggacttgaaaacaacttggttccatctgttcacatcaagaaattgaatggcatcga 3606874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 20684134 - 20684194
Alignment:
Q  253 aagtccgaaagacaacaattttgctgtcaatt-tgcattatccataggtaaatgcctattt 312  Q
    ||||||| |||||||||||||| ||| ||||| |||||| | |||||||||||| ||||||    
T  20684134 aagtccggaagacaacaattttactgccaattatgcattgttcataggtaaatgtctattt 20684194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 25682791 - 25682554
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||||||||| |||| |||||| || ||| ||||||||||| ||||||||||||||||||||| |||||| |||||  ||||||||||||| | |    
T  25682791 agacgatagagcttgtactagagtagctgagtcaaactcgaagacagcccggtcccatctgttcacattagcaaagtgaatgacatcgagtaaggctact 25682692  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||||| ||||||||||||  ||||| |||||| |||||||||   ||||||||||| |||||||||||||| ||||| |||||||||||||    
T  25682691 gcctccccctccaacactgtcatatttgcccgttgccatttcgtttgagcccagataaattgcccacgggagtctctaacacaacacgcaaaagatgtaa 25682592  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
    |||||||||| ||| | ||| || ||||||||||||||    
T  25682591 gatggttacgttcatgaaacacggcatccacattgcac 25682554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 44527389 - 44527156
Alignment:
Q  5 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 104  Q
    |||||||||||||| | |||||  || || |||||||||||||||||||||||||||||  |||||||||| ||||  || || |||||||| | |||||    
T  44527389 gatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagcaaagtgaagggcctctagtaaggctactgcct 44527290  T
Q  105 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 204  Q
    ||||||||||||||||||||||| |||| | |||||||||||||||| ||||||||||||| |  ||||||||||| ||||| ||||||||||||| |||    
T  44527289 ccccctccaaaactgtcatatttgtccgctgccattttgtttgagcccgaataaattgcccacaagagtctctaacacaacacgcaaaagatgtaatatg 44527190  T
Q  205 gttacggtcaaggaacgcgacatccacattgcac 238  Q
    ||||| |||| |||||||| | ||||||||||||    
T  44527189 gttacagtcatggaacgcggcgtccacattgcac 44527156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 36733836 - 36733604
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||| ||||||||||| |||   ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||| | | |    
T  36733836 agacgatatagcttgcactagagttatagagtcagactcgaagacaacccggtcccatttgttcacatcagcaaagtgaataacattgagtaagactact 36733737  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    ||||||||||||||||||| |||||||  |||||  ||||||||||||||| |||||||||| || || ||||||||||| |||||  |||||| |||||    
T  36733736 gcctccccctccaaaactgccatatttacccgttgtcattttgtttgagcccgaataaattgtccacgagagtctctaacacaacacacaaaaggtgtaa 36733637  T
Q  201 gatggttacggtcaaggaacgcgacatccacat 233  Q
    ||||||||  |||| | |||||| |||||||||    
T  36733636 gatggttatagtcatgaaacgcggcatccacat 36733604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 48166377 - 48166157
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||| |||||||||||| || |||||| ||||||||||||||||||||||| |||||| | ||||||| |||||| |||||  ||||||||||||| |||    
T  48166377 agactatagagcttgcaatagagtagctgaatcagactcgaagacaacccgatcccatatattcacataagcaaagtgaatgacatcgagtaaggctatt 48166278  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    | ||||| |||||||||||||||||||   || | ||||||  |||||||| |||||||||| || |||||||||||||| |||||  ||||||||||||    
T  48166277 gtctcccactccaaaactgtcatatttgctcgctgccatttcatttgagcccgaataaattgaccacgggagtctctaacacaacacacaaaagatgtaa 48166178  T
Q  201 gatggttacggtcaaggaacg 221  Q
    |||||||||||||| ||||||    
T  48166177 gatggttacggtcatggaacg 48166157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 48949771 - 48950008
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||| |||||||||| |||||| || |   ||||||||||||||||||||||||||||| || || |||| ||||| |||||||||||||| | |    
T  48949771 agacgatagcgcttgcactagagtagctgagttgaactcgaagacaacccggtcccatctgttcccaacaacaaagtgaatcgcatcgagtaaggcaact 48949870  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||||||||| ||||||||   |||| |||||| ||||||||| |||| |||||||  |||||||||||||| ||||| || ||||||||||    
T  48949871 gcctccccctccaaaactttcatatttgctcgttgccatttcgtttgagcccgaatgaattgccaacgggagtctctaacacaacacgcgaaagatgtaa 48949970  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||| | ||||||| | |||||| ||||||||||||||    
T  48949971 tatgttgacggtcatgaaacgcggcatccacattgcac 48950008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 51113455 - 51113218
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||| |||||||||| |||||| || || |||||||||||||||||||||||||||||| || || |||| |||||  ||||||||||||| | |    
T  51113455 agacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatctgttcccaacaacaaagtgaatgacatcgagtaaggcaact 51113356  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    ||||||||||||||||| || ||||||   |||| |||||| ||||||| | |||| |||||||| |||||||||||||| ||||| || ||||||||||    
T  51113355 gcctccccctccaaaacggttatatttgctcgttgccatttcgtttgagtccgaatgaattgcccacgggagtctctaacacaacacgcgaaagatgtaa 51113256  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||| | ||||||| | ||| || ||||||||||||||    
T  51113255 tatgttgacggtcatgaaacacggcatccacattgcac 51113218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4395298 - 4395062
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| |||||  || |  |||||||||| |||| |||||||||| ||| |||||||||| ||||  || ||||||||||| | |    
T  4395298 agacgatagagcttgcactagagtagatgagttggactcgaagataacctggtcccatctattcgcatcagcaaagtgaagggcctcgagtaaggctagt 4395199  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||| || |||||| ||||||||  ||| | |||||| | ||||||| | ||||||||||| || ||||||||||| || |||||||||| ||| |    
T  4395198 gcctccccttc-aaaactctcatatttgcccgctgccatttcgattgagcccggataaattgcccacgagagtctctaacacagcatgcaaaagttgtga 4395100  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||||||||||||| |||||||| | ||||||||||||    
T  4395099 tatggttacggtcatggaacgcggcttccacattgcac 4395062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 52109593 - 52109361
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||| |||||||||| |||| |||||  |||||| |||| ||||||||||  |||||||||||  |||||||||| ||||   | ||||||||||| | |    
T  52109593 agacaatagagcttgtactagagtagatgaatcacactcaaagacaaccca-tcccatctgttagcatcagcaaagtgaaggacctcgagtaaggctact 52109495  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    || |||||||||||||   ||||||||  ||| | |||||| |||||||||||||||||||| || | |||||||||||| ||||||||||||||| |||    
T  52109494 gcatccccctccaaaatgatcatatttgcccgctgccatttcgtttgagcctgaataaattgtccacaggagtctctaacacaacatgcaaaagatataa 52109395  T
Q  201 gatggttacggtcaaggaacgcgacatccacatt 234  Q
    |||| ||||||||| ||||| | || ||||||||    
T  52109394 gatgattacggtcatggaacacaacgtccacatt 52109361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5609479 - 5609242
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||||| |||||||| |||||  || ||  |||||||||||||||| || ||||||||| || || |||| ||||   | ||||||||||| | |    
T  5609479 agacgatagagtttgcactagagtagatgagtcgaactcgaagacaacccgatctcatctgttcgcaacatcaaagtgaaggacctcgagtaaggctact 5609380  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||| ||||||| |||||||| |||| |  |||   ||||||||| ||||||||||| |  | ||||||||| | || || || |||| |||||    
T  5609379 gcctcccccttcaaaactatcatatttgtccgctgtcatagagtttgagcccgaataaattgctcgtgtgagtctctagcacagcacgcgaaagttgtaa 5609280  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     |||||||| |||| |||||||||||||||||||||||    
T  5609279 tatggttacagtcatggaacgcgacatccacattgcac 5609242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 16816847 - 16817083
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||| |||| |||| |||| |||||  || || |||||||||||||||||||||||||||||  |||||||||| ||||  || ||||||||||| | |    
T  16816847 agacggtagaacttgaactagagtagacgagtcggactcgaagacaacccggtcccatctgtttgcatcagcaaaatgaagggcctcgagtaaggctact 16816946  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||| ||||||||||| ||||||||||  ||  | |||||||| ||||||  ||||||||||| | || ||||||||||  ||| |  ||||||||||||    
T  16816947 gcct-cccctccaaaattgtcatatttgcccactgccattttgattgagctcgaataaattgcacgcgagagtctctaaaacaatacacaaaagatgtaa 16817045  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     |||||||| | || |||||||| | ||| ||||||||    
T  16817046 tatggttacagacatggaacgcggcgtccgcattgcac 16817083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 44602888 - 44602766
Alignment:
Q  5 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 104  Q
    |||||||||||||||| |||||| || | |||||||||| |||||||||| |||||||||||||||| ||| |||||  ||||||||||| | | || ||    
T  44602888 gatagagcttgcactagagtagcggagttagactcgaaggcaacccggtctcatctgttcacatcagtaaagtgaatgacatcgagtaagactaatgtct 44602789  T
Q  105 ccccctccaaaactgtcatattt 127  Q
    |||||||||||| ||||||||||    
T  44602788 ccccctccaaaattgtcatattt 44602766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 237
Target Start/End: Complemental strand, 24538544 - 24538414
Alignment:
Q  107 ccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggt 206  Q
    ||||||||||||||| |||||  | | | ||| || ||||||||| |||||||||  || |||||||||||||| |||||  |||||||| |||  ||||    
T  24538544 ccctccaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattatccacgggagtctctaacacaacacacaaaagatctaacttggt 24538445  T
Q  207 tacggtcaaggaacgcgacatccacattgca 237  Q
    |||||| |  ||||||| |||||||||||||    
T  24538444 tacggttatagaacgcggcatccacattgca 24538414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 388
Target Start/End: Original strand, 22572109 - 22572257
Alignment:
Q  238 catttttctgtaggt--aagtccgaaagacaacaattttgctgtcaatt-tgcattatccataggtaaatgcctatttttctatggttgaaactcttatt 334  Q
    |||||||||||||||  |||||  ||||||| ||||||| |||| |||| ||||||||||||||||||||||   ||| ||| | | | ||| || ||||    
T  22572109 catttttctgtaggttaaagtctaaaagacatcaattttactgttaattatgcattatccataggtaaatgc---tttgtctgtcggtaaaaatcatatt 22572205  T
Q  335 taaacgattacttatatatttaactacaactcagttgtctgtaactataagtgg 388  Q
    ||||| |||||    |||||||||||||||| |||| ||| |||||||||||||    
T  22572206 taaaccattac--ccatatttaactacaacttagttttctataactataagtgg 22572257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2885363 - 2885313
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccg 51  Q
    |||||||||||||||||||| |||||| || || |||||||||||||||||    
T  2885363 agacgatagagcttgcactagagtagctgagtctgactcgaagacaacccg 2885313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 465
Target Start/End: Original strand, 8904841 - 8904899
Alignment:
Q  407 ttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgtcggg 465  Q
    ||||||||||||||||||||||| |||||||||| ||| | | |||| |||||||||||    
T  8904841 ttcaattatttttaaatgaaaaattgtcaagattgtaaagagtcctccgaattgtcggg 8904899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 8904759 - 8904812
Alignment:
Q  260 aaagacaacaattttgctgtcaatt-tgcattatccataggtaaatgcctattt 312  Q
    ||||||| ||||||| | ||||||| ||||||||||||||||||||| ||||||    
T  8904759 aaagacatcaattttaccgtcaattatgcattatccataggtaaatgtctattt 8904812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 472
Target Start/End: Original strand, 14615076 - 14615140
Alignment:
Q  407 ttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgtcgggaatgacc 472  Q
    ||||||| ||||||||||||||  |||||| |||| ||| |||||||| |||||||||||| ||||    
T  14615076 ttcaattctttttaaatgaaaat-tgtcaaaattacaactggacctctaaattgtcgggaacgacc 14615140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 88699 - 88462
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| |||||  || || |||||||||||||||||||||||||||||  ||||| |||| ||||  || ||||||||||| | |    
T  88699 agacgatagagcttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcaacaaagtgaagggcctcgagtaaggctact 88600  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||||||||||||||||||  || || ||||||  |||||||| ||||||||||||| || ||||||||||| ||||||||||||| |||||    
T  88599 gcctccccctccaaaactgtcatatttgcccattgccatttcatttgagcccgaataaattgcccgcgagagtctctaacacaacatgcaaaagttgtaa 88500  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||||||||||||| |||||||  ||||||||||||||    
T  88499 tatggttacggtcatggaacgcagcatccacattgcac 88462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 44017365 - 44017570
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||||||||||||||||||| | || |||||||||||||||||  |||| ||| ||||||||| |||||  ||||| |||||||||||||   ||    
T  44017365 agacgatagagcttgcactaaagtaacggagtcagactcgaagacaacttggtctcatatgttcacattagcaacgtgaatggcatcgagtaaggttgtt 44017464  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    | |||||||||||||||||||||||||   || |  |||||| |||||||| ||||||||||||| |||||||||||||| ||||| || ||||||||||    
T  44017465 gtctccccctccaaaactgtcatatttgcacggtgtcattttatttgagcccgaataaattgcccacgggagtctctaacacaacacgcgaaagatgtaa 44017564  T
Q  201 gatggt 206  Q
    ||||||    
T  44017565 gatggt 44017570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 34695951 - 34696167
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||  |||||||||| |||||| || || ||||||||||||||||| |||||||| || ||||||||||| ||||| || | ||||||||| | |    
T  34695951 agacgataacgcttgcactagagtagcggagtcggactcgaagacaacccgttcccatctattgacatcagcaaagtgaatggccttgagtaaggctact 34696050  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||||||||||||||||||  ||| | |||  | | ||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  34696051 gcctccccctccaaaactgtcatatttgcccgctgcca--tcgattgagcccgaataaattgcccacgggagtctctaacgcaacacgcaaaagatgtaa 34696148  T
Q  201 gatggttacggtcaaggaa 219  Q
     ||| ||| ||||| ||||    
T  34696149 tatgcttatggtcatggaa 34696167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 34718363 - 34718579
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||  |||||||||| |||||| || || ||||||||||||||||| |||||||| || ||||||||||| ||||| || | ||||||||| | |    
T  34718363 agacgataacgcttgcactagagtagcggagtcggactcgaagacaacccgttcccatctattgacatcagcaaagtgaatggccttgagtaaggctact 34718462  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||||||||||||||||||  ||| | |||  | | ||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  34718463 gcctccccctccaaaactgtcatatttgcccgctgcca--tcgattgagcccgaataaattgcccacgggagtctctaacgcaacacgcaaaagatgtaa 34718560  T
Q  201 gatggttacggtcaaggaa 219  Q
     ||| ||| ||||| ||||    
T  34718561 tatgcttatggtcatggaa 34718579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 12130689 - 12130922
Alignment:
Q  5 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 104  Q
    ||||||||||| |||| |||||  || ||||||||||||| |||||| | |||||| ||  |||||||||| |||| ||| || |||||||| | |||||    
T  12130689 gatagagcttggactagagtagatgagtcagactcgaagataacccgattccatctatttgcatcagcaaagtgaagagcctcaagtaaggctactgcct 12130788  T
Q  105 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 204  Q
    |||||||||| ||| ||||||||   || |  ||||| ||||||||| |||||| |||||| |||||||||||||| |||||  ||||||||  || |||    
T  12130789 ccccctccaacactatcatatttgctcgctgtcatttcgtttgagcccgaataatttgcccgcgggagtctctaacacaacacccaaaagatagaatatg 12130888  T
Q  205 gttacggtcaaggaacgcgacatccacattgcac 238  Q
    |||||||||| |||||| | ||||||||||||||    
T  12130889 gttacggtcatggaacggggcatccacattgcac 12130922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 38 - 238
Target Start/End: Original strand, 18345571 - 18345770
Alignment:
Q  38 tcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgtttcc 137  Q
    ||||||||||  || |||||||||||  |||||||||| ||||  || ||||||||||| | |||||||||||| ||||||||||||||| |||||| ||    
T  18345571 tcgaagacaattcgatcccatctgttagcatcagcaaagtgaagggcctcgagtaaggctactgcctccccctc-aaaactgtcatatttgtccgttacc 18345669  T
Q  138 attttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattgca 237  Q
    |||| |||||||    |||||||| ||| ||| |||||||||| ||||| |||||||| |||| ||||||||| ||| ||||||   | |||||||||||    
T  18345670 atttcgtttgagttcaaataaattacccacggaagtctctaacacaacacgcaaaagaagtaatatggttacgctcatggaacgttgcgtccacattgca 18345769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 9710013 - 9709910
Alignment:
Q  57 atctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaat 156  Q
    |||||||| || | ||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||| | |||| |||||| ||||||||||||||    
T  9710013 atctgttcccaaccgcaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaactgtcatatttgttcgttgccatttcgtttgagcctgaat 9709914  T
Q  157 aaat 160  Q
    ||||    
T  9709913 aaat 9709910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 26198822 - 26198637
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| |||||| || || |||||||||||  |||||        |||||||| |||||| | ||| ||||| || ||||| | |    
T  26198822 agacgatagagcttgcactagagtagctgagtcggactcgaagac--cccgg--------gttcacattagcaaagtaaatggcatcaag-aaggctact 26198734  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatg 197  Q
    || |||||||||||||||||||||||| | || | ||||||| |||||||  ||||||||||||| |  ||||||||||| || ||  |||||||||    
T  26198733 gcatccccctccaaaactgtcatatttgttcgctaccattttatttgagctcgaataaattgcccacatgagtctctaacacagcacacaaaagatg 26198637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 1418028 - 1418154
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||| |||||||||| |||| |||||  || ||||||||||||||||||| ||||||||||||  |||||||||||  |||  | ||||||||||| | |    
T  1418028 agacaatagagcttgaactagagtagatgagtcagactcgaagacaacccagtcccatctgtttgcatcagcaaatcaaattacctcgagtaaggctact 1418127  T
Q  101 gcctccccctccaaaactgtcatattt 127  Q
    | ||| |||| || ||| |||||||||    
T  1418128 gtctctcccttcataaccgtcatattt 1418154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 9710094 - 9710036
Alignment:
Q  2 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatct 60  Q
    ||||||||||||||||||| |||| || | |||||||||||||||||||||||||||||    
T  9710094 gacgatagagcttgcactagagtatcaaagtcagactcgaagacaacccggtcccatct 9710036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 22845676 - 22845602
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaa 75  Q
    |||||||||||||||||||| |||||   | |  |||||||||||||||||||||||||||||| ||||||||||    
T  22845676 agacgatagagcttgcactagagtagattagttggactcgaagacaacccggtcccatctgttcgcatcagcaaa 22845602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 13109916 - 13109987
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagc 72  Q
    |||||||||||||| ||||| ||||| ||| || |||||||||||||||  |||||||||| || |||||||    
T  13109916 agacgatagagcttccactagagtagaagagtcggactcgaagacaaccatgtcccatctgatcgcatcagc 13109987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 14827218 - 14827126
Alignment:
Q  3 acgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaagg 95  Q
    |||||||||||||||||| ||||||  | ||||| || |||||||| || || ||||| |||| ||||| ||| |||||  ||||||||||||    
T  14827218 acgatagagcttgcactagagtagctaagtcagattcaaagacaactcgatctcatctattcatatcagtaaagtgaatgacatcgagtaagg 14827126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 390
Target Start/End: Complemental strand, 6298985 - 6298926
Alignment:
Q  331 tatttaaacgattacttatatatttaactacaactcagttgtctgtaactataagtggtg 390  Q
    ||||||||| |||||| ||||||||||||| || | |||||||| | |||||||||||||    
T  6298985 tatttaaaccattactcatatatttaactataatttagttgtctcttactataagtggtg 6298926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 11673525 - 11673478
Alignment:
Q  259 gaaagacaacaattttgctgtcaatt-tgcattatccataggtaaatg 305  Q
    |||||||| ||||||||||||||||| ||||||||||||| |||||||    
T  11673525 gaaagacatcaattttgctgtcaattatgcattatccataagtaaatg 11673478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 6e-60; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15606041 - 15606278
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| |||||| || || |||| ||||||||||||||||||| ||||| ||||| |||| ||||| |||||||||||||| | |    
T  15606041 agacgatagagcttgcactagagtagctgagtcggacttgaagacaacccggtcccatttgttcccatcaacaaagtgaatggcatcgagtaaggctact 15606140  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    ||||||||||||||||||||||| |||| ||| | |||||||||||||||| |||||| ||||||  ||||||||||||| ||||| | |||||||||||    
T  15606141 gcctccccctccaaaactgtcatgttttcccgctgccattttgtttgagcccgaataagttgcccatgggagtctctaacacaacacgaaaaagatgtaa 15606240  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||||||||| ||  | || ||| ||||||||||||||    
T  15606241 tatggttacgatcgtgaaatgcggcatccacattgcac 15606278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28107279 - 28107059
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| |||||| || | |||||||||||||||  | |||||||| |||| ||  ||||| ||||| ||||| |||||||| | |    
T  28107279 agacgatagagcttgcactagagtagcggagttagactcgaagacaacgtgatcccatctattcatatttgcaaagtgaatggcatcaagtaaggctact 28107180  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    ||||||||||||||||||||||||| | |||| | |||||| |||||||||||||||||||| || |||||||||||||| |||||  | ||||||||||    
T  28107179 gcctccccctccaaaactgtcatatctgtccgctgccatttcgtttgagcctgaataaattgtccacgggagtctctaacacaacacacgaaagatgtaa 28107080  T
Q  201 gatggttacggtcaaggaacg 221  Q
    |||||||||| ||| ||||||    
T  28107079 gatggttacgatcatggaacg 28107059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 19690926 - 19691073
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||| |||||  |||||| |||||| |||    
T  19690926 agacgatagagcttgcactaaagtagctgagtcagactcgaagacaactcggtcacatctgttcacatcagcaaagtgaatgacatcgaataaggctatt 19691025  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttga 148  Q
    |||||||| |||||||| ||||||||| ||||||  ||||| ||||||    
T  19691026 gcctccccttccaaaacggtcatatttgtccgttgtcatttcgtttga 19691073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 14680298 - 14680062
Alignment:
Q  5 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 104  Q
    ||||||||||||| || |||||  || || || || |||||||| |||| |||||||||  |||||||| | ||||  || ||||||||||| | |||||    
T  14680298 gatagagcttgcaatagagtagacgagtcggaatcaaagacaactcggttccatctgtttgcatcagcagagtgaagggcctcgagtaaggctactgcct 14680199  T
Q  105 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgc---ccccgggagtctctaacccaacatgcaaaagatgtaag 201  Q
    |||||||||| ||||||||||||| ||| | ||||||  ||||||||  ||||||||||   || |||||||||||||| |||||||||||||||||||     
T  14680198 ccccctccaatactgtcatattttcccgctgccatttcatttgagccataataaattgcccgccgcgggagtctctaacacaacatgcaaaagatgtaat 14680099  T
Q  202 atggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||||| |||||| ||||||||  |||||||||||||    
T  14680098 gtggttgcggtcatggaacgcggtatccacattgcac 14680062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 30802040 - 30802201
Alignment:
Q  3 acgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgc 102  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||  ||||||| | |||||||| ||||| | ||| ||||| |||||||| | |||    
T  30802040 acgatagagcttgcactaaagtagctgaatcggactcgaagacaacctagtcccattttttcacatctgcaaagtaaatggcatctagtaaggctactgc 30802139  T
Q  103 ctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcc 164  Q
    ||||||| |||||||||||||||||  ||| | ||||||||||| |||| ||||||||||||    
T  30802140 ctcccccaccaaaactgtcatatttgcccgctgccattttgtttaagcccgaataaattgcc 30802201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 15053222 - 15053430
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||| | |||||||| |||||| || || |||||||||||||||  ||| ||| | ||||| |||||||   |||| |||||||||||||| | |    
T  15053222 agacgatagcgtttgcactagagtagctgagtcggactcgaagacaaccttgtctcattttttcacgtcagcaaggcgaatggcatcgagtaaggctact 15053321  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||||| ||| ||||||||  ||| |  ||| ||||||||||| |||||||||| || | | |||||||||| ||||| |||||||||||||    
T  15053322 gcctccccctccaacactatcatatttacccgctgtcatcttgtttgagcccgaataaattgtccactgaagtctctaacacaacacgcaaaagatgtaa 15053421  T
Q  201 gatggttac 209  Q
    |||||||||    
T  15053422 gatggttac 15053430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 29368103 - 29368296
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||||| |||||  || || |||||||| |||    |||||||||| ||  |||||||||| ||||  || ||||||||||  |||    
T  29368103 agacgatagagcttgcactatagtagatgagtcggactcgaaaacagttaggtcccatctattagcatcagcaaagtgaagggcctcgagtaaggatatt 29368202  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagat 196  Q
    ||||||||||||||||||||||||||| |||| | ||||||  |||||||  |||||||||| || || ||||||| ||| ||||| |||||||||    
T  29368203 gcctccccctccaaaactgtcatatttatccgctgccatttcttttgagc--gaataaattgtccacgagagtctcaaacacaacacgcaaaagat 29368296  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 11731716 - 11731873
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||| ||||||||||||||| | |   ||| || ||||||||||||||| | ||| || ||||| |||||||||| |||| ||  |||||  ||||   |    
T  11731716 agacaatagagcttgcactatattgaaagagtcggactcgaagacaacctgttcctatatgttctcatcagcaaagtgaagagtctcgag--aggctgct 11731813  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaatt 161  Q
    |||||||| ||||||||||||||||||  ||| | |||||||||||||||| | |||||||    
T  11731814 gcctcccc-tccaaaactgtcatatttgcccgctgccattttgtttgagcccggataaatt 11731873  T

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Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 42340324 - 42340530
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||| |||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||| ||||| |||||  ||||||||| ||| |||    
T  42340324 agacgacagagcttgcactaaagtagctgagtctgactcgaagacaactcggtcccatctgttcacatctgcaaagtgaatgacatcgagtagggctatt 42340423  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    |||||||||||||| |||||||||| |  ||| | |||||||||||||||| |||||||||| || || ||||||||||| ||||| |||||||||||||    
T  42340424 gcctccccctccaacactgtcatatctgcccgctgccattttgtttgagcccgaataaattgtccacgagagtctctaacacaacacgcaaaagatgtaa 42340523  T
Q  201 gatggtt 207  Q
    |||||||    
T  42340524 gatggtt 42340530  T

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Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 53497172 - 53496935
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||||||||||||| | |||||  || || |||||||||||||||||||||||||||||  |||||||||| ||||  || || |||||||| | |    
T  53497172 agacgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagcaaagtgaagggcctctagtaaggctact 53497073  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    ||||||||||| |||||||||| |||| |||| |  ||||||||||||||| ||||||||||||| |  ||||||||||| ||||| |||||||||||||    
T  53497072 gcctccccctcaaaaactgtcacatttgtccgctgtcattttgtttgagcccgaataaattgcccacaagagtctctaacacaacacgcaaaagatgtaa 53496973  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||||||||||||| |||||||| | ||||||||||||    
T  53496972 tatggttacggtcatggaacgcggcgtccacattgcac 53496935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 55199651 - 55199414
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    ||||||||| |||||||| | |||||| || || |||| ||||||||||||||||||||||||  || || |||| ||||| |||||||||||||| | |    
T  55199651 agacgatagcgcttgcaccagagtagctgagtcggacttgaagacaacccggtcccatctgtttccaacaacaaagtgaatggcatcgagtaaggcaact 55199552  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 200  Q
    ||||||||||||||||||||||||||| || | |  ||||| ||||||||| |||| |||||||| |||||||||||||| ||||| || ||||||||||    
T  55199551 gcctccccctccaaaactgtcatatttatcagctgtcatttcgtttgagcccgaatgaattgcccacgggagtctctaacacaacacgcgaaagatgtaa 55199452  T
Q  201 gatggttacggtcaaggaacgcgacatccacattgcac 238  Q
     ||  | ||||||| | |||| | ||||||||||||||    
T  55199451 tatattgacggtcatgaaacgtggcatccacattgcac 55199414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 647307 - 647485
Alignment:
Q  50 cggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgtttccattttgtttgag 149  Q
    |||||||||||||||||||||||||| |||||  |||||||||||||   |||||||||||||| ||||||||||||   ||| | |||||| |||||||    
T  647307 cggtcccatctgttcacatcagcaaagtgaatgacatcgagtaaggctgctgcctccccctccataactgtcatattagcccgctgccatttcgtttgag 647406  T
Q  150 cctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatc 228  Q
    || | | ||||||||    | |||||||||| ||||| ||||||||||||| ||||||||| ||| |||||||| ||||    
T  647407 cccggaaaaattgcctagagaagtctctaacacaacacgcaaaagatgtaatatggttacgctcatggaacgcggcatc 647485  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 647210 - 647305
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggc 96  Q
    |||||||||||||||||||| |||||  || ||||||||||||| ||| ||||| |||||||||||||||||||| |||||  |||||||||||||    
T  647210 agacgatagagcttgcactagagtagatgagtcagactcgaagataactcggtcacatctgttcacatcagcaaagtgaatgacatcgagtaaggc 647305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 46007439 - 46007204
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 100  Q
    |||||||| || |||||||| |||||  ||||| |||||||||||| ||||  |||||||||||| |||  |||| ||||| ||||| |||||||| | |    
T  46007439 agacgatatagtttgcactagagtagttgaatcggactcgaagaca-cccg--cccatctgttcatatcgacaaagtgaatggcatcaagtaaggctact 46007343  T
Q  101 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctct-aacccaacatgcaaaagatgta 199  Q
    | ||||||||  |||| |||| |||||  ||| | |||||| ||||||||| |||||||||  || || |||||||| |||  |||| ||||||||| ||    
T  46007342 gtctccccctaaaaaattgtcgtatttgcccgctgccatttcgtttgagcccgaataaattttccacgagagtctctaaacaaaacacgcaaaagatata 46007243  T
Q  200 agatggttacggtcaaggaacgcgacatccacattgcac 238  Q
    ||||||||||  | | ||||| || ||||||||||||||    
T  46007242 agatggttacaataatggaacacggcatccacattgcac 46007204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 27941129 - 27941250
Alignment:
Q  89 agtaaggcgattgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatg 188  Q
    |||||||| | ||||||||||||||||||| |||||||| |||| | |||||||||||||| | |||||||||| || || || |||||||  ||||| |    
T  27941129 agtaaggctactgcctccccctccaaaactatcatatttgtccgctgccattttgtttgagtccgaataaattgtcctcgagaatctctaatacaacacg 27941228  T
Q  189 caaaagatgtaagatggttacg 210  Q
    ||||| || ||| |||||||||    
T  27941229 caaaaaatataatatggttacg 27941250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 11020258 - 11020353
Alignment:
Q  32 tcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatattt 127  Q
    ||||||||||||||||||| || |||| ||||| |||||||||| | ||||||||||||||| ||   || |||||||||||||| ||||||||||    
T  11020258 tcagactcgaagacaacccagttccatttgttcccatcagcaaagtaaatagcatcgagtaaagctgatgtctccccctccaaaagtgtcatattt 11020353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 48227550 - 48227319
Alignment:
Q  5 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagca-tcgagtaaggcgattgcc 103  Q
    |||||||||||||||| |||||  || || ||||| |||||||| ||||   |||  |||||||||||||| |||   |   ||||||||||| | |||     
T  48227550 gatagagcttgcactagagtagatgagtcggactcaaagacaactcggttttatccattcacatcagcaaagtgatggggtctcgagtaaggctactgca 48227451  T
Q  104 tccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagat 203  Q
    |||| |||||| || ||||| |||| ||  | |  ||| |||| |||| ||||||||||||| || ||||||||||| ||||| ||||||||||||| ||    
T  48227450 tcccactccaatacagtcatgttttcccactgctgtttcgtttaagcccgaataaattgcccgcgagagtctctaacacaacacgcaaaagatgtaacat 48227351  T
Q  204 ggttacggtcaaggaacgcgacatccacattg 235  Q
    ||||||||| | | || ||| |||||||||||    
T  48227350 ggttacggtaatgaaatgcggcatccacattg 48227319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 66 - 237
Target Start/End: Complemental strand, 2615568 - 2615397
Alignment:
Q  66 catcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgccc 165  Q
    |||||||||| ||||   ||||||||||||| | ||||||||||||||||||| ||||||||  ||| | ||| || ||||||||| |||| ||||||||    
T  2615568 catcagcaaagtgaacgacatcgagtaaggctactgcctccccctccaaaactatcatatttgcccgctgccaattcgtttgagcccgaatgaattgccc 2615469  T
Q  166 ccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattgca 237  Q
     |   || ||||||| ||||   ||||| |||||| ||||||| | ||| | ||||||  ||||||||||||    
T  2615468 acaaaagcctctaacacaacgcacaaaaaatgtaatatggttatgatcatgaaacgcggtatccacattgca 2615397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 24176910 - 24176833
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattg 78  Q
    |||||||||||||||||||| |||||  |  |||||||||||||||||||  || |||||||||| |||| |||||||    
T  24176910 agacgatagagcttgcactagagtagttgtgtcagactcgaagacaacccaatctcatctgttcaaatcaacaaattg 24176833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 461
Target Start/End: Complemental strand, 33633765 - 33633710
Alignment:
Q  406 cttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgt 461  Q
    |||||||| ||||||||||||||  ||||||||||||| | ||||||| |||||||    
T  33633765 cttcaattctttttaaatgaaaagttgtcaagattatatcaggacctccgaattgt 33633710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27608950 - 27608999
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaaccc 50  Q
    ||||||||| |||||||||| |||||| || || ||||||||||||||||    
T  27608950 agacgatagcgcttgcactagagtagctgagtcggactcgaagacaaccc 27608999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34497419 - 34497468
Alignment:
Q  1 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaaccc 50  Q
    ||||||||| |||||||||| |||||| || || ||||||||||||||||    
T  34497419 agacgatagcgcttgcactagagtagctgagtcggactcgaagacaaccc 34497468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 444652 - 444700
Alignment:
Q  265 caacaattttgctgtcaatt-tgcattatccataggtaaatgcctattt 312  Q
    ||||| |||||||||||||| | |||| |||||||||||||||||||||    
T  444652 caacagttttgctgtcaattatacattgtccataggtaaatgcctattt 444700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 322 - 89
Alignment:
Q  5 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 104  Q
    ||||| |||||||||| |||||| || || |||||||||||||||||||||||| | ||| || ||||||| ||||| |||||||||||||| | |||||    
T  322 gatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggcatcgagtaaggcaactgcct 223  T
Q  105 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 204  Q
    |||||||| ||||||||||||||   ||||  ||||| ||||||||| |||| |||||||| |||||||||||||  ||||| || ||||||   | |||    
T  222 ccccctcccaaactgtcatatttgctcgttgtcatttcgtttgagcccgaatgaattgcccacgggagtctctaaaacaacacgcgaaagatngtatatg 123  T
Q  205 gttacggtcaaggaacgcgacatccacattgcac 238  Q
     | ||||||| | ||| |||||||||||||||||    
T  122 ttgacggtcatgaaacacgacatccacattgcac 89  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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