View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11438_low_10 (Length: 392)
Name: NF11438_low_10
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 363
Target Start/End: Complemental strand, 48751702 - 48751346
Alignment:
| Q |
7 |
gaagcagagaggacttgaggaaatattttggtgtgcccctattgcataacaaaaccaggacaggtacctatcagtttatccttttgataaggttgcttag |
106 |
Q |
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| T |
48751702 |
gaagcagaaaggacttgacgaaatattttggtgtgcccctattgcataacaaaaccagaacaggtacctatcagtttatccttttgataaggttgcttag |
48751603 |
T |
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| Q |
107 |
atgctaactaactgaaagtcaaatattatttccctagctgatagaactacccttgccaaatttgtaactcgtctttcacaaaatactattttgtcaaaga |
206 |
Q |
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| T |
48751602 |
atactaactaactgaaagtcaaatattatttccatagctgatagaattacccttgccaaatctgtaactcgtctttcacaaaatactattttgtcaaaga |
48751503 |
T |
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| Q |
207 |
tttctcaattttccactatatttcggtccctccaaagctcttcctcccctcaaactcccaaacaaagccttcagatcaattttctctcctataaaatgtg |
306 |
Q |
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| T |
48751502 |
tttctcaattttccactatatttcggtccctccaaagctcttcctcccctcaaactcccaaacaaagccttcggatcaattttctctcctataaaatgtg |
48751403 |
T |
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| Q |
307 |
gaggccttggattaagatctgcttggaatatgaattaatgattaatagtgtgacatc |
363 |
Q |
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| T |
48751402 |
gaggccttggattaagatctgcttggaatatgaattaatgattaatagtgtgacatc |
48751346 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 23963188 - 23963229
Alignment:
| Q |
202 |
aaagatttctcaattttccactatatttcggtccctccaaag |
243 |
Q |
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| T |
23963188 |
aaagatttctcaattttcctctatatttcggtccccccaaag |
23963229 |
T |
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