View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11438_low_12 (Length: 385)
Name: NF11438_low_12
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 46449226 - 46449610
Alignment:
| Q |
1 |
attgtttgatgatgtcattctgttgtccgagggtcagattgtatatcaggggccgcgtgaggctgctattgaatttttcaaacttatgggattcagttgt |
100 |
Q |
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| T |
46449226 |
attgtttgatgatgtcattctgttgtccgagggtcagattgtatatcaggggccgcgtgaggctgctattgaatttttcaaacttatgggattcagttgt |
46449325 |
T |
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| Q |
101 |
cctgagagaaaaaatgtagcagacttcttacaagaagtgagtagcagtgatatttgaataagtatttctaatacattttaacttaagtggctgttcagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46449326 |
cctgagagaaaaaatgtagcagacttcttacaagaagtgagtagcagtgatatttgaataagtatttctaatacattttaacttaagtggctgttcagac |
46449425 |
T |
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| Q |
201 |
ttaaaaatcttatcaacaggtcacgtctaagaaggatcaagagcagtactggtccgttctcgaccgcccttaccggtacattcctgtcgggaaatttgcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46449426 |
ttaaaaatcttatcaacaggtcacgtctaagaaggatcaagagcagtactggtccgttctcgaccgcccttaccggtacattcctgtcgggaaatttgcc |
46449525 |
T |
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| Q |
301 |
caagcattttccttgtatcgtgagggaaagcttttgtctgaggaactaaatgttcctttcaataggcgcaataatcatccagctg |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46449526 |
caagcattttccttgtatcgtgagggaaagcttttgtctgaggaactaaatgttcctttcaataggcgcaataatcatccagctg |
46449610 |
T |
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