View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11438_low_14 (Length: 352)

Name: NF11438_low_14
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11438_low_14
NF11438_low_14
[»] chr3 (8 HSPs)
chr3 (1-337)||(9308719-9309059)
chr3 (182-277)||(36430162-36430256)
chr3 (182-265)||(27221606-27221689)
chr3 (182-265)||(37921781-37921864)
chr3 (163-265)||(46278786-46278894)
chr3 (182-257)||(35127000-35127075)
chr3 (182-257)||(2545215-2545290)
chr3 (151-185)||(9291952-9291986)
[»] chr5 (3 HSPs)
chr5 (145-265)||(2643469-2643589)
chr5 (182-272)||(11016235-11016325)
chr5 (194-235)||(14435282-14435323)
[»] chr4 (7 HSPs)
chr4 (143-265)||(25536848-25536977)
chr4 (143-264)||(25516641-25516769)
chr4 (182-277)||(2035212-2035303)
chr4 (145-216)||(50063910-50063981)
chr4 (182-258)||(28071217-28071293)
chr4 (145-185)||(2035313-2035353)
chr4 (145-183)||(28071305-28071343)
[»] chr8 (9 HSPs)
chr8 (182-272)||(990102-990192)
chr8 (182-265)||(13958552-13958635)
chr8 (182-239)||(11676552-11676609)
chr8 (182-239)||(11668250-11668307)
chr8 (182-234)||(7839829-7839881)
chr8 (182-216)||(29668941-29668975)
chr8 (145-185)||(7839891-7839931)
chr8 (145-185)||(11676502-11676542)
chr8 (151-185)||(30735816-30735850)
[»] chr6 (6 HSPs)
chr6 (182-264)||(3185831-3185913)
chr6 (182-265)||(9673-9756)
chr6 (182-265)||(12399-12482)
chr6 (182-234)||(30641461-30641513)
chr6 (145-185)||(9766-9806)
chr6 (145-185)||(12492-12532)
[»] chr1 (4 HSPs)
chr1 (185-264)||(23552376-23552455)
chr1 (143-185)||(35754225-35754267)
chr1 (185-216)||(8082035-8082066)
chr1 (232-265)||(35754296-35754329)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 9309059 - 9308719
Alignment:
Q  1 aatctgaagacaatcaaaaaa-tcaatatgtacctttaacaaaaatcttggaagtgattctacgaaggaagagatgtcgaaaaacagaagtgcagggttt 99  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9309059 aatctgaagacaataaaaaaaatcaatatgtacctttaacaaaaatcttggaagtgattctacgaaggaagagatgtcgaaaaacagaagtgcagggttt 9308960  T
Q  100 tgagtgagagagcaagcttgaagaaattcctccaagtgttgccataagaataggagaagaaggaatctgaatctaatcttttttacttacttctcttcct 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9308959 tgagtgagagagcaagcttgaagaaattcctccaagtgttgccatgagaatagaagaagaaggaatctgaatctaatcttttttacttacttctcttcct 9308860  T
Q  200 gcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggtttgcgatttgcgattttgttgcagcttcactcttccttc---a 296  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   |    
T  9308859 gcttgcgatttgcgattctcgtgttgccgtttcttgcttcattctctttcttcaggtttgcgatttgcgattttgttgcagcttcactcttcattcaata 9308760  T
Q  297 ataatagtaattaataattactttttagatggtttgtttgt 337  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  9308759 ataataataattaataattactttttagatggtttatttgt 9308719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 182 - 277
Target Start/End: Original strand, 36430162 - 36430256
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggtttgcgatttgcgattttgttg 277  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| || ||||||||||||||||||||||||||||    
T  36430162 ttacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctc-ttgttcaggtttgcgatttgcgattttgttg 36430256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 27221606 - 27221689
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggtttgcgattt 265  Q
    |||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  27221606 ttacttacttctcttccttcttccgatttgcgattctggtgttgccgtttcttgcttcactctctttcttcaggtttgcgattt 27221689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 37921864 - 37921781
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggtttgcgattt 265  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||  ||||||||||||||||    
T  37921864 ttacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctcttcgttcaggtttgcgattt 37921781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 46278786 - 46278894
Alignment:
Q  163 aatctgaatctaatcttttttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgc------ttcattctctttcttcaggt 256  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||      |||||||||||| |||||||    
T  46278786 aatctgaatcttatcttttttacttacttctcttcatgcttgcgatttgcgattttggtgttgccgtttcttgcttcttgttcattctctttgttcaggt 46278885  T
Q  257 ttgcgattt 265  Q
    |||||||||    
T  46278886 ttgcgattt 46278894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 35127075 - 35127000
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggtt 257  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||    
T  35127075 ttacttacttctcttcctgcttgcgatttgccattctggtgttgccgtttcttgcttcactctctttcttcaggtt 35127000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 2545215 - 2545290
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggtt 257  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||    
T  2545215 ttacttacttctcttcctgcttgagatttgcgattcttgtgttgccgtttcttgcttcactctctttgttcaggtt 2545290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 9291952 - 9291986
Alignment:
Q  151 aggagaagaaggaatctgaatctaatcttttttac 185  Q
    ||||||||||| |||||||||||||||||||||||    
T  9291952 aggagaagaagaaatctgaatctaatcttttttac 9291986  T

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Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 2643589 - 2643469
Alignment:
Q  145 aagaataggagaagaaggaatctgaatctaatcttttttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattct 244  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||    
T  2643589 aagaacaggaggagaaggaatctgaatcttatcttttttacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactct 2643490  T
Q  245 ctttcttcaggtttgcgattt 265  Q
    |||||||||||||||||||||    
T  2643489 ctttcttcaggtttgcgattt 2643469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 11016235 - 11016325
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggtttgcgatttgcgattt 272  Q
    ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |||||||||||||||||||||||    
T  11016235 ttacttacttctcttcctgcttgcgatttgcgattctggtgttgctgtttcttgcttcattctctttgttcaggtttgcgatttgcgattt 11016325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 14435323 - 14435282
Alignment:
Q  194 cttcctgcttgcgatttgcgattctcgtgttaccgtttcttg 235  Q
    |||||||||| |||||||||||||| ||||| ||||||||||    
T  14435323 cttcctgcttccgatttgcgattctggtgttgccgtttcttg 14435282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 143 - 265
Target Start/End: Original strand, 25536848 - 25536977
Alignment:
Q  143 ataagaataggagaagaaggaatctgaatctaatcttttttacttacttctcttcctgc-------ttgcgatttgcgattctcgtgttaccgtttcttg 235  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||||||| ||||| ||||||||||    
T  25536848 ataagaacaggagaagaaggaatctgaatcttatcttttttacttacttctcttcctgcttgcgatttgcgatttgcgattctggtgttgccgtttcttg 25536947  T
Q  236 cttcattctctttcttcaggtttgcgattt 265  Q
    ||||| ||||||||||||| ||||||||||    
T  25536948 cttcactctctttcttcagctttgcgattt 25536977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 25516769 - 25516641
Alignment:
Q  143 ataagaataggagaagaaggaatctgaatctaatcttttttacttacttctcttcctgcttgcgatttgc-------gattctcgtgttaccgtttcttg 235  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||| ||||| ||||||||||    
T  25516769 ataagaacaggagaagaaggaatctgaatcttatcttttttacttacttctcttcctgcttgcgatttgcgatttgcgattctggtgttgccgtttcttg 25516670  T
Q  236 cttcattctctttcttcaggtttgcgatt 264  Q
    ||||| ||||||||||||| |||||||||    
T  25516669 cttcactctctttcttcagctttgcgatt 25516641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 2035303 - 2035212
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggtttgcgatttgcgattttgttg 277  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    || ||||||||||||||||||||||||||||||    
T  2035303 ttacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttca----ctctcttcaggtttgcgatttgcgattttgttg 2035212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 50063910 - 50063981
Alignment:
Q  145 aagaataggagaagaaggaatctgaatctaatcttttttacttacttctcttcctgcttgcgatttgcgatt 216  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50063910 aagaacaggagaagaaggaatctgaatcttatcttttttacttacttctcttcctgcttgcgatttgcgatt 50063981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 28071293 - 28071217
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggttt 258  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||    
T  28071293 ttacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcattctatttgttcaggttt 28071217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 2035353 - 2035313
Alignment:
Q  145 aagaataggagaagaaggaatctgaatctaatcttttttac 185  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  2035353 aagaacaggagaagaaggaatctgaatcttatcttttttac 2035313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 28071343 - 28071305
Alignment:
Q  145 aagaataggagaagaaggaatctgaatctaatctttttt 183  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  28071343 aagaacaggagaagaaggaatctgaatcttatctttttt 28071305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 990192 - 990102
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggtttgcgatttgcgattt 272  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  990192 ttacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctctttcttcaggtttgcgatttgcgattt 990102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 13958552 - 13958635
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggtttgcgattt 265  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  13958552 ttacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcattctctttcttcaggtttgcgattt 13958635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 11676552 - 11676609
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttc 239  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  11676552 ttacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttc 11676609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 11668250 - 11668307
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttc 239  Q
    |||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  11668250 ttacttacttctcttcctgcttgcgacttgcgattctggtgttgccgtttcttgcttc 11668307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 7839881 - 7839829
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttctt 234  Q
    |||||||||||| |||||||||||||||||||| ||| ||||| |||||||||    
T  7839881 ttacttacttctgttcctgcttgcgatttgcgactctggtgttgccgtttctt 7839829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 29668941 - 29668975
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgatt 216  Q
    |||||||||||||||||||||||||||||||||||    
T  29668941 ttacttacttctcttcctgcttgcgatttgcgatt 29668975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 7839931 - 7839891
Alignment:
Q  145 aagaataggagaagaaggaatctgaatctaatcttttttac 185  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  7839931 aagaacaggagaagaaggaatctgaatcttatcttttttac 7839891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 11676502 - 11676542
Alignment:
Q  145 aagaataggagaagaaggaatctgaatctaatcttttttac 185  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  11676502 aagaacaggagaagaaggaatctgaatcttatcttttttac 11676542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 30735850 - 30735816
Alignment:
Q  151 aggagaagaaggaatctgaatctaatcttttttac 185  Q
    ||||||||||||||||||||||| |||||||||||    
T  30735850 aggagaagaaggaatctgaatcttatcttttttac 30735816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 3185913 - 3185831
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggtttgcgatt 264  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||    
T  3185913 ttacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctctttcttcaggtttgcgatt 3185831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 9756 - 9673
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggtttgcgattt 265  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||||||| || |||||||||||||    
T  9756 ttacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggtttgcgattt 9673  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 12482 - 12399
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggtttgcgattt 265  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||||||| || |||||||||||||    
T  12482 ttacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggtttgcgattt 12399  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 30641513 - 30641461
Alignment:
Q  182 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttctt 234  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||    
T  30641513 ttacttacttctcttcctgcttgcgatttccgattctggtgttgccgtttctt 30641461  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 9806 - 9766
Alignment:
Q  145 aagaataggagaagaaggaatctgaatctaatcttttttac 185  Q
    ||||| ||||||||||||||| ||||||| |||||||||||    
T  9806 aagaacaggagaagaaggaatatgaatcttatcttttttac 9766  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 12532 - 12492
Alignment:
Q  145 aagaataggagaagaaggaatctgaatctaatcttttttac 185  Q
    ||||| ||||||||||||||| ||||||| |||||||||||    
T  12532 aagaacaggagaagaaggaatatgaatcttatcttttttac 12492  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 23552455 - 23552376
Alignment:
Q  185 cttacttctcttcctgcttgcgatttgcgattctcgtgttaccgtttcttgcttcattctctttcttcaggtttgcgatt 264  Q
    |||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||||| |||||||||||||||    
T  23552455 cttacttctcttcctgcttgcgatttgcgattctggtgttgccctttcttgcttcactctctttgttcaggtttgcgatt 23552376  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 35754225 - 35754267
Alignment:
Q  143 ataagaataggagaagaaggaatctgaatctaatcttttttac 185  Q
    ||||||| ||||||||||||||||||||||| |||||||||||    
T  35754225 ataagaacaggagaagaaggaatctgaatcttatcttttttac 35754267  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 216
Target Start/End: Original strand, 8082035 - 8082066
Alignment:
Q  185 cttacttctcttcctgcttgcgatttgcgatt 216  Q
    ||||||||||||||||||||||||||||||||    
T  8082035 cttacttctcttcctgcttgcgatttgcgatt 8082066  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 35754296 - 35754329
Alignment:
Q  232 cttgcttcattctctttcttcaggtttgcgattt 265  Q
    ||||||||||||||||| ||||||||||||||||    
T  35754296 cttgcttcattctctttgttcaggtttgcgattt 35754329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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