View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11438_low_16 (Length: 329)
Name: NF11438_low_16
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 36755620 - 36755313
Alignment:
| Q |
6 |
cacagagagcataccaatagggaaaaagctatagccatatcagccgaaaaacaaatgacagtacacataattacaatgcaaaccacaccagtagacacta |
105 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
36755620 |
cacagagagcataccattagggaaaaagctatagccatatcagccgaaaaacaaatgacagtacacagaattacaatgcaaaccacaccagtagacagta |
36755521 |
T |
|
| Q |
106 |
aaaacccccgaaccgaatgtagaaaatcgatcatagcacagccaccaaaatgagatctcaccagtaaaatacattacctcccgcataaaagtaaacacgg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36755520 |
aaaacccccgaaccgaatgtagaaaatcgatcatagcacagccaccaaaatgagatctcgccagtaaaatacattacctcccgcataaaagtaaacacgg |
36755421 |
T |
|
| Q |
206 |
actcttgcccattctacctaaaaaccatggccatgacaaaaccttgaatttatccacaacttgatgcgccataacgacacaattattgaactatctatca |
305 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36755420 |
actctt-cccattctacctaaaaaccatggccatgacaaaaccttgaatttatccacaacttgatgcgccataacgacacaattattgaacaatctatca |
36755322 |
T |
|
| Q |
306 |
ttcctaact |
314 |
Q |
| |
|
||||||||| |
|
|
| T |
36755321 |
ttcctaact |
36755313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 70 - 277
Target Start/End: Complemental strand, 36748086 - 36747879
Alignment:
| Q |
70 |
acataattacaatgcaaaccacaccagtagacactaaaaacccccgaaccgaatgtagaaaatcgatcatagcacagccaccaaaatgagatctcaccag |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || ||||||||| | | |
|
|
| T |
36748086 |
acataattacaatgcaaaccacaccagtagacactaaaaaaccccgaaccgaatgtagaaaatcgatcatatcacagccaccgaattgagatctcgcatg |
36747987 |
T |
|
| Q |
170 |
taaaatacattacctcccgcataaaagtaaacacggactcttgcccattctacctaaaaaccatggccatgacaaaaccttgaatttatccacaacttga |
269 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || | || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36747986 |
taaaatacattacctcccacataaaagtaaacacgaacccctggccattctacctaaaaaccatggccatgacaaaaccttgaatttatccacaacatga |
36747887 |
T |
|
| Q |
270 |
tgcgccat |
277 |
Q |
| |
|
| |||||| |
|
|
| T |
36747886 |
tacgccat |
36747879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 40 - 194
Target Start/End: Complemental strand, 36766483 - 36766332
Alignment:
| Q |
40 |
ccatatcagccgaaaaacaaatgacagtacacataattacaatgcaaaccacaccagtagacactaaaaacccccgaaccgaatgtagaaaatcgatcat |
139 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||| ||||||| ||| |||||||| |||||||||||||| | ||||||||||||||||| |
|
|
| T |
36766483 |
ccatatcagccgaaaaacaaatgaccgtacaca--attacaattcaaaccatgccactagacacttaaaacccccgaaccta-tgtagaaaatcgatcat |
36766387 |
T |
|
| Q |
140 |
agcacagccaccaaaatgagatctcaccagtaaaatacattacctcccgcataaa |
194 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
36766386 |
agcacagccaccgaattgagatctcgccagtaaaatacattacctcccccataaa |
36766332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 193 - 314
Target Start/End: Complemental strand, 36766306 - 36766181
Alignment:
| Q |
193 |
aaagtaaacacggactcttgcccattctacctaaaaaccatggccatgac----aaaaccttgaatttatccacaacttgatgcgccataacgacacaat |
288 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36766306 |
aaagtaaacacggactcttagccattctttctaaaaaccatcgccatgactgacaaaaccttgaatttatccacaacttgatacgccataacgacacaat |
36766207 |
T |
|
| Q |
289 |
tattgaactatctatcattcctaact |
314 |
Q |
| |
|
|||| ||| ||||||||||||||||| |
|
|
| T |
36766206 |
tattaaacaatctatcattcctaact |
36766181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University