View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11438_low_17 (Length: 314)
Name: NF11438_low_17
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_low_17 |
 | |
|
| [»] scaffold0017 (2 HSPs) |
| | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 35900709 - 35900990
Alignment:
| Q |
20 |
aaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcattatacatgagtnnnnnn |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35900709 |
aaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcattatacatgagtgggggg |
35900808 |
T |
|
| Q |
120 |
nnnataggattcttcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatat |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35900809 |
---ataggattcttcattggcttcgttggcttggcaggctcaatatttttactaccatcttggagagaaacttgctccaaattcttgaacacattgatat |
35900905 |
T |
|
| Q |
220 |
tgaaaatcttcttgtggtggaagcagtaaatgtataccttgctagttgctctaagttggatgaatatgatgggcaggtacctatg |
304 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35900906 |
tgaaaatcttcttgtggaggaagcagtaaatgtataccttgctagttgctctaagttggatgaatatgatgggcaggtacctatg |
35900990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 24 - 248
Target Start/End: Original strand, 44614275 - 44614499
Alignment:
| Q |
24 |
tgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgac---aatttaatatttttggaagcattatacatgagtnnnnnnn |
120 |
Q |
| |
|
||||||| ||||| ||| | ||| ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
44614275 |
tgtccagaagaagatccatcaaaacatcaagtgccaacaactgatgcaggagatgatgataattcaatatttttggaagcattatacatgag---catgg |
44614371 |
T |
|
| Q |
121 |
nnataggattcttcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatatt |
220 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
44614372 |
ggataggattcttcactggtttcgttggcttggtcggctcaatgttgttactaccatcttggagagaaacttactccagattcttgaacactttgatatt |
44614471 |
T |
|
| Q |
221 |
gaaaatcttcttgtggtggaagcagtaa |
248 |
Q |
| |
|
|||| || || ||||||||||||||||| |
|
|
| T |
44614472 |
gaaagtcatcatgtggtggaagcagtaa |
44614499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 24 - 248
Target Start/End: Complemental strand, 44784186 - 44783965
Alignment:
| Q |
24 |
tgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcattatacatgagtnnnnnnnnna |
123 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||||| ||||| |||||| ||||||||||||| | ||||||||||||| ||||||||||| | |
|
|
| T |
44784186 |
tgtccaggtgaagagccaccaaaacatcaagtgccaacaattgatgctggagatgacaattcagtatttttggaagcgttatacatgag---catgggga |
44784090 |
T |
|
| Q |
124 |
taggattcttcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatattgaa |
223 |
Q |
| |
|
|||||||||| | | |||||||| || ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || || ||||||| |
|
|
| T |
44784089 |
taggattctttactagtttcgttggttttataggctcaatattgttactaccatcttggagagaaacctactccaaattcttgaatactttaatattgag |
44783990 |
T |
|
| Q |
224 |
aatcttcttgtggtggaagcagtaa |
248 |
Q |
| |
|
|||| || | ||||||||||||||| |
|
|
| T |
44783989 |
aatcatcatctggtggaagcagtaa |
44783965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 141 - 246
Target Start/End: Complemental strand, 17810045 - 17809940
Alignment:
| Q |
141 |
ttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatattgaaaatcttcttgtggtgga |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| |||||||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
17810045 |
ttcgttggcttggtaggctcaatattgttactaccgtcttggagagatacttactccagattcttgaacactttgatattgaaagtcttcacgtggtgga |
17809946 |
T |
|
| Q |
241 |
agcagt |
246 |
Q |
| |
|
|||||| |
|
|
| T |
17809945 |
agcagt |
17809940 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 44146583 - 44146671
Alignment:
| Q |
24 |
tgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcattatacatgag |
112 |
Q |
| |
|
|||||||| ||||||||| | ||| ||||||||| || |||||||||||||||||||||| ||||||||| |||||||| |||||||| |
|
|
| T |
44146583 |
tgtccaggagaagagccatcaaaacatcaagtgccgactactgatgcaggagatgacaattcaatatttttagaagcattctacatgag |
44146671 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 11542924 - 11542858
Alignment:
| Q |
40 |
caccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcattata |
106 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
11542924 |
caccaaaacatcaagtgccgacaactgatgcagaagatgacaattcaatatttttggaagcattata |
11542858 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 11542859 - 11542783
Alignment:
| Q |
154 |
taggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatattgaaaatcttc |
230 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| | || ||||||| ||||||| |
|
|
| T |
11542859 |
taggctcaatatcgttactgccatcttggagagaaacctactccaaattcttgaatgctttaatattgagaatcttc |
11542783 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 182230 - 182462
Alignment:
| Q |
20 |
aaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcattatacatgagtnnnnnn |
119 |
Q |
| |
|
|||||||||| |||||||| |||| ||| ||||||||| |||||| |||||||||||||| |||| | ||||||||||||||||||| ||||| |
|
|
| T |
182230 |
aaagtgtccatgcgaagagacaccaaaacatcaagtgccaacaacggatgcaggagatgaaaattcagtatttttggaagcattatatatgag---catg |
182326 |
T |
|
| Q |
120 |
nnnataggattcttcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatat |
219 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
182327 |
gggataggattcttcactggtttcattggcttggtaggctcaatattgttactaccatcttggagagaaacttactccagattcttgaacactttgatat |
182426 |
T |
|
| Q |
220 |
tgaaaatcttcttgtggtggaagcagtaaatgtata |
255 |
Q |
| |
|
||||| || || |||||||||||| || |||||||| |
|
|
| T |
182427 |
tgaaagtcatcatgtggtggaagccgtgaatgtata |
182462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 51 - 242
Target Start/End: Original strand, 171174 - 171362
Alignment:
| Q |
51 |
caagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcattatacatgagtnnnnnnnnnataggattcttcgttggcttcgttggct |
150 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||| |||||||||||| ||| |||||||| | |
|
|
| T |
171174 |
caagtgccaacaactgatgcaggagatgaaaattcaatattttttgaagcattatatatgag---catggggataggattcttcactggtttcgttggtt |
171270 |
T |
|
| Q |
151 |
tggtaggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatattgaaaatcttcttgtggtggaag |
242 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || || |||||| ||| ||| ||||||||||| |
|
|
| T |
171271 |
tggtaggctcaatattgttactaccatcttggagagaaacctactccaaattcttgaatactttactattgagaattttcatgtggtggaag |
171362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 51 - 242
Target Start/End: Complemental strand, 27618 - 27430
Alignment:
| Q |
51 |
caagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcattatacatgagtnnnnnnnnnataggattcttcgttggcttcgttggct |
150 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||| |||||||||||| ||| |||||||| | |
|
|
| T |
27618 |
caagtgccaacaactgatgcaggagatgaaaattcaatattttttgaagcattatatatgag---catggggataggattcttcactggtttcgttggtt |
27522 |
T |
|
| Q |
151 |
tggtaggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatattgaaaatcttcttgtggtggaag |
242 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || || |||||| ||| ||| ||||||||||| |
|
|
| T |
27521 |
tggtaggctcaatattgttactaccatcttggagagaaacctactccaaattcttgaatactttactattgagaattttcatgtggtggaag |
27430 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 26729892 - 26730116
Alignment:
| Q |
24 |
tgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcattatacatgagtnnnnnnnnna |
123 |
Q |
| |
|
|||||||| ||||||||| | || ||||||||| |||||| || ||||| | || |||| ||||||||||||||| ||||||||||| | |
|
|
| T |
26729892 |
tgtccaggagaagagccaaccgaacatcaagtgccaacaacaaattcaggaaacgagaattcaatatttttggaagctttatacatgag---catgggga |
26729988 |
T |
|
| Q |
124 |
taggattcttcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatattgaa |
223 |
Q |
| |
|
||||||||||| | | |||||||||||||||||||||||| | ||| || | |||||||||||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
26729989 |
taggattcttcactagtttcgttggcttggtaggctcaataatgttaatatcgtcttggagagaaacttactccagattcttgaacaccttgatcttgaa |
26730088 |
T |
|
| Q |
224 |
aatcttcttgtggtggaagcagtaaatg |
251 |
Q |
| |
|
| |||| ||||||||||||||| |||| |
|
|
| T |
26730089 |
agccttcatgtggtggaagcagtgaatg |
26730116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 33 - 246
Target Start/End: Complemental strand, 29506010 - 29505800
Alignment:
| Q |
33 |
gaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcattatacatgagtnnnnnnnnnataggattct |
132 |
Q |
| |
|
|||||||| || ||| ||||||||| || |||||||||||||||| ||| || ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29506010 |
gaagagccgccaaaacatcaagtgccaataactgatgcaggagattacagttcaatatttttggaagcattatacatgagcatggggc---taggattct |
29505914 |
T |
|
| Q |
133 |
tcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatattgaaaatcttctt |
232 |
Q |
| |
|
|| | || |||||||| |||| |||||||| || |||||||||||||||||||| || |||||||||||||| | |||||||||||| | ||| | |
|
|
| T |
29505913 |
tcactacttttgttggctttatagggtcaatattgttcctaccatcttggagagaaacctattccaaattcttgaatgctttgatattgaaagtgttcat |
29505814 |
T |
|
| Q |
233 |
gtggtggaagcagt |
246 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29505813 |
gtggtggaagcagt |
29505800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 29218336 - 29218239
Alignment:
| Q |
156 |
ggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatattgaaaatcttcttgtggtggaagcagtaaatgta |
253 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||||| ||||||||||||||||| | | ||||||| |||| || |||| |||||||||| |||||| |
|
|
| T |
29218336 |
ggctcaatattgttactaccgtcttggaaagaaacctactccaaattcttgaatgcgataatattgagaatcatcatgtgctggaagcagtgaatgta |
29218239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 29227342 - 29227281
Alignment:
| Q |
51 |
caagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcattatacatgag |
112 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
29227342 |
caagtgccaacaactgatgtaggagatgacaattcaatatttctggaagcattctacatgag |
29227281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 29331635 - 29331538
Alignment:
| Q |
156 |
ggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatattgaaaatcttcttgtggtggaagcagtaaatgta |
253 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||||| ||||||||||||||||| | | ||||||| |||| || |||| |||||||||| |||||| |
|
|
| T |
29331635 |
ggctcaatattgttactaccgtcttggaaagaaacctactccaaattcttgaatgcgataatattgagaatcatcatgtgctggaagcagtgaatgta |
29331538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 29340641 - 29340580
Alignment:
| Q |
51 |
caagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcattatacatgag |
112 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
29340641 |
caagtgccaacaactgatgtaggagatgacaattcaatatttctggaagcattctacatgag |
29340580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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