View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11438_low_18 (Length: 309)
Name: NF11438_low_18
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_low_18 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 46532352 - 46532063
Alignment:
| Q |
1 |
aggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46532352 |
aggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgcca |
46532253 |
T |
|
| Q |
101 |
ccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctccatcttcaataagcagctacact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
46532252 |
ccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacaccgaggctccatcttcaataagcagctacact |
46532153 |
T |
|
| Q |
201 |
ggttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgaccaagtgtttcttgtggctcatgattggggtgctatc |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46532152 |
ggttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgaccaagtgtttcttgtggctcatgattggggtgctatc |
46532063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 46524797 - 46524510
Alignment:
| Q |
3 |
gtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgccacc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46524797 |
gtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgccacc |
46524698 |
T |
|
| Q |
103 |
aaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctccatcttcaataagcagctacactgg |
202 |
Q |
| |
|
| ||||||||||| |||||||||| ||||| || |||||||| ||||| ||||||||||||||||| || ||||| |||||| | || |||||||| || |
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|
| T |
46524697 |
agattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagttagtagctacacagg |
46524598 |
T |
|
| Q |
203 |
ttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgaccaagtgtttcttgtggctcatgattggggtgctatc |
290 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
46524597 |
ttttcacatagtaggtgatcttgttgcacttatagattttctgggtgttgatcaagtgtttcttgttgctcatgattggggtgctatc |
46524510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 286
Target Start/End: Original strand, 46322762 - 46323045
Alignment:
| Q |
3 |
gtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgccacc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||| || |||||||||| |
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|
| T |
46322762 |
gtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtactcttggcgccacc |
46322861 |
T |
|
| Q |
103 |
aaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctccatcttcaataagcagctacactgg |
202 |
Q |
| |
|
| |||| ||||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
46322862 |
agattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgaggctccatcttcaataagcagctacacagg |
46322961 |
T |
|
| Q |
203 |
ttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgaccaagtgtttcttgtggctcatgattggggtgc |
286 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
46322962 |
ttttcacattgtaggtgatctggttgcacttatagatttgcttggcgttgatcaagtgtttcttgtagctcatgattggggtgc |
46323045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 46479301 - 46479018
Alignment:
| Q |
3 |
gtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgccacc |
102 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||||||||| || ||||| ||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
46479301 |
gtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccacc |
46479202 |
T |
|
| Q |
103 |
aaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctccatcttcaataagcagctacactgg |
202 |
Q |
| |
|
| |||| ||||||||||||||||||||||| || |||||||||||||| |||||||| || ||||| || ||||| ||||||||||||||||||| |
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|
| T |
46479201 |
agattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaat |
46479102 |
T |
|
| Q |
203 |
ttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgaccaagtgtttcttgtggctcatgattggggtgc |
286 |
Q |
| |
|
|| ||| | || ||||| | ||||| || || || | || || |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
46479101 |
cttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttgaccaagtgttccttgtagctcatgattggggtgc |
46479018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 46520731 - 46520448
Alignment:
| Q |
3 |
gtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgccacc |
102 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||||||||| || ||||| ||||||||||| |||||||| ||||||||||||||||||||||||| |
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|
| T |
46520731 |
gtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccacc |
46520632 |
T |
|
| Q |
103 |
aaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctccatcttcaataagcagctacactgg |
202 |
Q |
| |
|
| |||| ||||||||||||||||||||||| || |||||||||||||| |||||||| || ||||| || ||||| ||||||||||||||||||| |
|
|
| T |
46520631 |
agattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaat |
46520532 |
T |
|
| Q |
203 |
ttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgaccaagtgtttcttgtggctcatgattggggtgc |
286 |
Q |
| |
|
|| ||| | || ||||| | ||||| || || || | || || |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
46520531 |
cttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttgaccaagtgttccttgtagctcatgattggggtgc |
46520448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 3 - 278
Target Start/End: Original strand, 46326467 - 46326742
Alignment:
| Q |
3 |
gtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgccacc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||| || |||||||||| |
|
|
| T |
46326467 |
gtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtactcttggcgccacc |
46326566 |
T |
|
| Q |
103 |
aaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctccatcttcaataagcagctacactgg |
202 |
Q |
| |
|
| |||| ||||| || |||||||||||||| || |||||||| ||||| ||||||||||||||||| || | ||| ||||| || ||||||||||| | |
|
|
| T |
46326567 |
agattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgacacagatgttccgtcttccattagcagctacacatg |
46326666 |
T |
|
| Q |
203 |
ttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgaccaagtgtttcttgtggctcatgat |
278 |
Q |
| |
|
||||||| | || |||||| ||||| | || || || ||||||||||| || ||||| || ||||| | ||||||| |
|
|
| T |
46326667 |
ttttcacgtagttggtgacattgtttctctcatcgacttgcttggtgtggaacaagttttccttgttggtcatgat |
46326742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 46490503 - 46490220
Alignment:
| Q |
3 |
gtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgccacc |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46490503 |
gtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggtattcatggcgccacc |
46490404 |
T |
|
| Q |
103 |
aaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctccatcttcaataagcagctacactgg |
202 |
Q |
| |
|
| ||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || ||||| | || || || |||||||| |
|
|
| T |
46490403 |
agatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctccggcctccattagtagctacacaat |
46490304 |
T |
|
| Q |
203 |
ttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgaccaagtgtttcttgtggctcatgattggggtgc |
286 |
Q |
| |
|
|| || | || |||||| | ||||| || || || | ||||| ||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
46490303 |
cttccatttggttggtgacatcgttgctctcatcgactcacttggcgttgaccgagtgtttcttgtagctcatgattggggtgc |
46490220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 46494801 - 46494632
Alignment:
| Q |
3 |
gtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgccacc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||| || |||||||||| |
|
|
| T |
46494801 |
gtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacggattccctgaactctggtactcttggcgccacc |
46494702 |
T |
|
| Q |
103 |
aaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactga |
172 |
Q |
| |
|
| |||| ||||| ||||| ||||||||||| || || ||||| ||||| ||||| ||||| || ||||| |
|
|
| T |
46494701 |
agattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatggcgatactga |
46494632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 46517090 - 46516803
Alignment:
| Q |
3 |
gtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgccacc |
102 |
Q |
| |
|
||||||||||||||||||||| | || || ||||||||||||||||| | || |||||||||||||| || || ||| ||||||| ||||||||||||| |
|
|
| T |
46517090 |
gtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtactcatggcgccacc |
46516991 |
T |
|
| Q |
103 |
aaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctccatcttcaataagcagctacactgg |
202 |
Q |
| |
|
| ||||| ||||| ||||||| || |||||| |||| ||||||||||| ||||||| ||||||||||| ||||| ||||| | || |||||||| |
|
|
| T |
46516990 |
agattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacactgatgctcccacttcagttagtagctacacaat |
46516891 |
T |
|
| Q |
203 |
ttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgaccaagtgtttcttgtggctcatgattggggtgctatc |
290 |
Q |
| |
|
||| || | || ||||| | ||||| || || || | || ||||| |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
46516890 |
tttacatttggttggtgatatcgttgctctaattgactcactgggtgtggaccaagttttccttgtggctcatgattggggtgctatc |
46516803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 46494588 - 46494518
Alignment:
| Q |
216 |
ggtgaccttgttgcacttatagatttgcttggtgttgaccaagtgtttcttgtggctcatgattggggtgc |
286 |
Q |
| |
|
|||||| ||||||| || || || | |||||| ||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
46494588 |
ggtgacattgttgcgctcatcgactcgcttggggttgatcaagtcttccttgtggctcatgattggggtgc |
46494518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 90 - 286
Target Start/End: Original strand, 7475308 - 7475504
Alignment:
| Q |
90 |
tcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctccatcttcaataa |
189 |
Q |
| |
|
|||||||||||||| ||| ||||||| |||||||||| |||| | ||| ||| | ||||| ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
7475308 |
tcatggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacaccgattctccatcttcaataa |
7475407 |
T |
|
| Q |
190 |
gcagctacactggttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgaccaagtgtttcttgtggctcatgattggggtgc |
286 |
Q |
| |
|
|||||||||| || ||||| || || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7475408 |
gcagctacacagggtttcatatggttggtgaccttgttgcacttatagattttcttggtgttgatcaagtgtttcttgtggctcatgattggggtgc |
7475504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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