View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11438_low_19 (Length: 301)

Name: NF11438_low_19
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11438_low_19
NF11438_low_19
[»] chr4 (4 HSPs)
chr4 (1-285)||(46449648-46449932)
chr4 (220-285)||(8569176-8569241)
chr4 (220-275)||(5892511-5892566)
chr4 (243-285)||(36396076-36396118)
[»] chr5 (1 HSPs)
chr5 (219-285)||(39897155-39897221)
[»] chr2 (1 HSPs)
chr2 (219-284)||(21712829-21712894)
[»] chr8 (6 HSPs)
chr8 (218-276)||(5478798-5478856)
chr8 (220-281)||(9784723-9784784)
chr8 (227-285)||(17602720-17602778)
chr8 (217-285)||(19152189-19152257)
chr8 (242-285)||(9786741-9786784)
chr8 (227-260)||(17607431-17607464)
[»] chr1 (7 HSPs)
chr1 (220-285)||(49116407-49116472)
chr1 (220-285)||(49121000-49121065)
chr1 (220-285)||(26623053-26623118)
chr1 (220-285)||(26627648-26627713)
chr1 (220-285)||(27958411-27958476)
chr1 (244-286)||(9834632-9834674)
chr1 (219-273)||(35235594-35235648)
[»] scaffold0256 (1 HSPs)
scaffold0256 (223-285)||(15114-15176)
[»] chr7 (3 HSPs)
chr7 (220-285)||(35933898-35933963)
chr7 (220-285)||(35938499-35938564)
chr7 (220-285)||(25453806-25453871)
[»] scaffold0012 (1 HSPs)
scaffold0012 (220-285)||(165611-165676)
[»] chr6 (1 HSPs)
chr6 (220-273)||(26890513-26890565)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 46449648 - 46449932
Alignment:
Q  1 acttctcaagattaattatcagtggcagaagcttctcattaaacggaatgcatttatttacatttttaaatttgttcaggtaatgctaccattataaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46449648 acttctcaagattaattatcagtggcagaagcttctcattaaacggaatgcatttatttacatttttaaatttgttcaggtaatgctaccattataaaat 46449747  T
Q  101 ctaaggtacaagtaattctagtgaaattacctcaagaaaaagcaaatattcttgtaatctcagaatcttctttgttacgtgtttgaacttgtgacccttt 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46449748 ctacggtacaagtaattctagtgaaattacctcaagaaaaagcaaatattcttgtaatctcagaatcttctttgttacgtgtttgaacttgtgacccttt 46449847  T
Q  201 cttttcattattttaattttgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46449848 cttttcattattttaattttgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 46449932  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 8569176 - 8569241
Alignment:
Q  220 tgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8569176 tgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 8569241  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 5892566 - 5892511
Alignment:
Q  220 tgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatataga 275  Q
    |||||| |||| ||||||||| ||||| ||||||||||| ||||||||||||||||    
T  5892566 tgtcacgaatattggcttgatacctttttcattgttatttcttgtgtatatataga 5892511  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 36396076 - 36396118
Alignment:
Q  243 ctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    |||||||||||||||| ||||| |||||| |||||||||||||    
T  36396076 ctttctcattgttatttcttgtttatatacagaggttacaagg 36396118  T

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Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 39897155 - 39897221
Alignment:
Q  219 ttgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39897155 ttgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 39897221  T

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Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 21712894 - 21712829
Alignment:
Q  219 ttgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaag 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21712894 ttgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatataggggttacaag 21712829  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 5478798 - 5478856
Alignment:
Q  218 tttgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5478798 tttgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagag 5478856  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 9784723 - 9784784
Alignment:
Q  220 tgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttac 281  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  9784723 tgtcacaaataatggcttgatgcctttctccttgttattccttatgtatatatagaggttac 9784784  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 17602720 - 17602778
Alignment:
Q  227 aataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    |||| |||||||||||||||||||||||||||| || |||||||| |||||||||||||    
T  17602720 aatattggcttgatgcctttctcattgttattctttatgtatataaagaggttacaagg 17602778  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 19152189 - 19152257
Alignment:
Q  217 ttttgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    ||||||||||||||| |  ||||||  |||||| ||||||||||||||||||||||| |||||||||||    
T  19152189 ttttgtcacaaataacgatttgatgtttttctcgttgttattccttgtgtatatataaaggttacaagg 19152257  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 9786741 - 9786784
Alignment:
Q  242 cctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||    
T  9786741 cctttctccttgttattccttatgtatatatagagattacaagg 9786784  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Original strand, 17607431 - 17607464
Alignment:
Q  227 aataatggcttgatgcctttctcattgttattcc 260  Q
    |||| |||||||||||||||||||||||||||||    
T  17607431 aatattggcttgatgcctttctcattgttattcc 17607464  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 49116472 - 49116407
Alignment:
Q  220 tgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  49116472 tgtcacaaataatggcttgatgcctttctccttgttatttcttgtgtatatatagaggttacaagg 49116407  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 49121065 - 49121000
Alignment:
Q  220 tgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  49121065 tgtcacaaataatggcttgatgcctttctccttgttatttcttgtgtatatatagaggttacaagg 49121000  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 26623053 - 26623118
Alignment:
Q  220 tgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  26623053 tgtcacaaataatggcttgatgcctttctccttgttatttcttatgtatatatagaggttacaagg 26623118  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 26627648 - 26627713
Alignment:
Q  220 tgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  26627648 tgtcacaaataatggcttgatgcctttctccttgttatttcttatgtatatatagaggttacaagg 26627713  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 27958476 - 27958411
Alignment:
Q  220 tgtcacaaataatggctt-gatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  27958476 tgtcagaaatattggctttgatgcctttctcattgttattccttgtgtatatataga-gttacaagg 27958411  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 9834674 - 9834632
Alignment:
Q  244 tttctcattgttattccttgtgtatatatagaggttacaaggt 286  Q
    ||||||||||||||||||||| |||||||| ||||||||||||    
T  9834674 tttctcattgttattccttgtatatatatataggttacaaggt 9834632  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 35235594 - 35235648
Alignment:
Q  219 ttgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatata 273  Q
    |||||||||||||||  |||||| |||||||||||||||||||| | ||||||||    
T  35235594 ttgtcacaaataatgctttgatgtctttctcattgttattccttatatatatata 35235648  T

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Target: scaffold0256 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 15114 - 15176
Alignment:
Q  223 cacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15114 cacagataatggcttgatacctttctcattgttattccttgtgtatatatagaggttacaagg 15176  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 35933898 - 35933963
Alignment:
Q  220 tgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  35933898 tgtcacaaataatggcttgatgcctttctccttgttatttcttatgtatatatagaggttacaagg 35933963  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 35938499 - 35938564
Alignment:
Q  220 tgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  35938499 tgtcacaaataatggcttgatgcctttctccttgttatttcttatgtatatatagaggttacaagg 35938564  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 25453806 - 25453871
Alignment:
Q  220 tgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    |||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  25453806 tgtcacaaataatggcttaatgcctttctccttgttatttcttatgtatatatagaggttacaagg 25453871  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 165676 - 165611
Alignment:
Q  220 tgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaagg 285  Q
    |||||| |||| || ||||||||||||||||||||||||| || |||||||| ||||| |||||||    
T  165676 tgtcacgaatattgacttgatgcctttctcattgttattctttctgtatataaagaggatacaagg 165611  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 26890565 - 26890513
Alignment:
Q  220 tgtcacaaataatggcttgatgcctttctcattgttattccttgtgtatatata 273  Q
    |||||||||| | |||||||| | ||| ||||||||||||||||||||||||||    
T  26890565 tgtcacaaattacggcttgatactttt-tcattgttattccttgtgtatatata 26890513  T

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