View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11438_low_2 (Length: 590)
Name: NF11438_low_2
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 19 - 568
Target Start/End: Complemental strand, 9247107 - 9246558
Alignment:
| Q |
19 |
cacagaagacgattgtactaaccttgtcaagttacttccttccacagaggctgctcttcttgactgggcaatcaatttgatggctgatgttgttgaaaat |
118 |
Q |
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| T |
9247107 |
cacagaagacgattgcactaaccttgtcaagttacttccttccacagaggctgctcttcttgactgggcaatcaatttgatggctgatgttgttgaaaat |
9247008 |
T |
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| Q |
119 |
gaacagttcaataagatgaatgcgcgcaacgtagctatggttttcgcacccaacatgacacaggtttgttaacaatatcatactaagaaaataatctttg |
218 |
Q |
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| T |
9247007 |
gaacagttcaataagatgaatgcgcgcaacgtagctatggttttcgcacccaacatgacacaggtttgttaacaatatcatactaagaaaataatctttg |
9246908 |
T |
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| Q |
219 |
tttttgtttattgctttctttaaaaccagaaatgtttctggttggttattcataaaccaatctcgtttcgctcatttaccaatttattatctgagtttgc |
318 |
Q |
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| T |
9246907 |
tttttgtttattgctttctttaaaaccagaaatgtttctggttggttattcataaaccaatctcgtttcgctcatttaccaatttattatctgagtttgc |
9246808 |
T |
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| Q |
319 |
atctaaaattctatggaaattctactcgaaaatatacaagcatgttaaaatcaactctatatctgaaatcaattttgcatactccaaaagtggaacgaaa |
418 |
Q |
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| T |
9246807 |
atctaaaattctatggaaattctactcgaaaatatacaagcatgttaaaatcaattctatatctgaaatcaattttgcatactccaaaagtggaacgaaa |
9246708 |
T |
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| Q |
419 |
aatagaagtactaagagacaaactttcttgtgaaatccagatggcagaccccttaactgcattgattcatgcagtacaagttatgaacttcttaaagaca |
518 |
Q |
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| T |
9246707 |
aatacaagtactaagagacaaactttcttgtgaaatccagatggcagaccccttaactgcattgattcatgcagtacaagttatgaacttcttaaagaca |
9246608 |
T |
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| Q |
519 |
ttgattttgaaaatgcttcgagaaagagaagaatcaattgataatgcaag |
568 |
Q |
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| T |
9246607 |
ttgattttgaaaatgcttcgagaaagagaagaatcaattgataatgcaag |
9246558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 36407631 - 36407736
Alignment:
| Q |
83 |
tgggcaatcaatttgatggctgatgttgttgaaaatgaacagttcaataagatgaatgcgcgcaacgtagctatggttttcgcacccaacatgacacagg |
182 |
Q |
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| T |
36407631 |
tgggccatcaatctaatggctgatgtagtcgaacacgaaaatctcaataagatgaacgcacgcaacattgccatggttttcgcaccaaacatgactcagg |
36407730 |
T |
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| Q |
183 |
tttgtt |
188 |
Q |
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| T |
36407731 |
tctgtt |
36407736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 184
Target Start/End: Original strand, 27036251 - 27036344
Alignment:
| Q |
89 |
atcaatttgatggctgatgttgttgaaaatgaacagttcaataagatgaatgcgcgcaacgtagctatggttttcgcacccaacatgacacaggtt |
184 |
Q |
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| T |
27036251 |
atcaatctgatggctgatgttgtacaagaggaacatctgaataagatgaatgcgtgcaacattgccatggtttt--caccaaacatgactcaggtt |
27036344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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