View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11438_low_24 (Length: 274)
Name: NF11438_low_24
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 43735571 - 43735815
Alignment:
| Q |
12 |
agacaaagaaaaagatatagcctctgatggatcagcctcaaagagatggaatctatgtacaatagatcaagttgaagagctaaaagccatcatcaaaatc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43735571 |
agacaaagaaaaagatatagcctctgatggatcagcctcaaagagatggaatctatgtacaatagatcaagttgaagagctaaaagccatcatcaaaatc |
43735670 |
T |
|
| Q |
112 |
attcccatttggtcttcaagtatcatggtgtcagttagcagtagccaatcctcatatcatttgctacaagcccaaaccatggacagacacatcacttcaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43735671 |
attcccatttggtcttcaagtatcatggtgtcagttagcagtagccagtcctcatatcatttgctacaagcccaaaccatggacagacacatcacttcaa |
43735770 |
T |
|
| Q |
212 |
actttgaaattccagcaggttcgttcggtgtcttcataatgttgg |
256 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43735771 |
actttgaaattccagcaggatcgttcggtgtcttcataatgttgg |
43735815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 43703530 - 43703608
Alignment:
| Q |
23 |
aagatatagcctctgatggatcagcctcaaagagatggaatctatgtacaatagatcaagttgaagagctaaaagccat |
101 |
Q |
| |
|
||||||||||||| ||||| ||||| ||| | |||| |||||| ||| |||||||||||||||| ||||||||||| |
|
|
| T |
43703530 |
aagatatagcctcagatggttcagcgataaatcgttggagtctatgcacagtagatcaagttgaagaactaaaagccat |
43703608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 43714501 - 43714579
Alignment:
| Q |
23 |
aagatatagcctctgatggatcagcctcaaagagatggaatctatgtacaatagatcaagttgaagagctaaaagccat |
101 |
Q |
| |
|
||||||||||||| ||||| ||||| ||| | |||| |||||| ||| |||||||||||||||| ||||||||||| |
|
|
| T |
43714501 |
aagatatagcctcagatggttcagcgataaatcgttggagtctatgcacagtagatcaagttgaagaactaaaagccat |
43714579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University