View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11438_low_26 (Length: 243)
Name: NF11438_low_26
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 42289196 - 42289410
Alignment:
| Q |
15 |
aaggaacaacactttacattaacaacaatagctctttaagtgatcatcaagttggttttgtcaattcaatgcaacatggtcaaaacatgtctagtcctca |
114 |
Q |
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| T |
42289196 |
aaggaacaacactttacattaacaacaatagctctttaagtgatcatcaagttggttttgtcaattcaatgcaacatggtcaaaacatgtctagtcctca |
42289295 |
T |
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| Q |
115 |
catgtctgccactgcattgcttcaaaaagcttctcagattggttcaactaattctaccaacaataacaaaggtagtaataatgatcataaatcaggtgat |
214 |
Q |
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| T |
42289296 |
catgtctgccactgcattgcttcaaaaagcttctcagattggttcaactaattctaccaacaataacaaaggtagtaataatgatcataaatcaggtgat |
42289395 |
T |
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| Q |
215 |
agggactttgttgtg |
229 |
Q |
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| T |
42289396 |
agggactttgttgtg |
42289410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 12801419 - 12801370
Alignment:
| Q |
113 |
cacatgtctgccactgcattgcttcaaaaagcttctcagattggttcaac |
162 |
Q |
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| T |
12801419 |
cacatgtcggcaactgcattgcttcaaaaagctgctcaaattggttcaac |
12801370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 12777562 - 12777616
Alignment:
| Q |
109 |
tcctcacatgtctgccactgcattgcttcaaaaagcttctcagattggttcaact |
163 |
Q |
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| T |
12777562 |
tcctcacatgtcagcaactgctttgcttcaaaaagcttctcaaatgggtgcaact |
12777616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 36990848 - 36990901
Alignment:
| Q |
110 |
cctcacatgtctgccactgcattgcttcaaaaagcttctcagattggttcaact |
163 |
Q |
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| T |
36990848 |
cctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaact |
36990901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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