View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11438_low_30 (Length: 218)
Name: NF11438_low_30
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 27561653 - 27561473
Alignment:
| Q |
22 |
aaacacagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcgaaattgaatgggaaggttattcaca |
121 |
Q |
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| T |
27561653 |
aaacacagttgaagcgatcgaaagatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcgaaattgagtgggaaggttattcaca |
27561554 |
T |
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| Q |
122 |
caaactgccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
202 |
Q |
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| T |
27561553 |
caaacttccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
27561473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 36668526 - 36668348
Alignment:
| Q |
22 |
aaacacagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcga--aattgaatgggaaggttattca |
119 |
Q |
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| T |
36668526 |
aaacacagttgaagcgatggaaagatgcagctcatgaagctgtatcattgcgtgcgaaagcacattcgctaagagagaaattgagtgggaaggttattca |
36668427 |
T |
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| Q |
120 |
cacaaactgccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtc |
198 |
Q |
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| T |
36668426 |
cacaaactgccatttcattttctttctcaccttctttgtgataggtcttttacagaaagttatctagataatttgagtc |
36668348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 36672831 - 36672887
Alignment:
| Q |
27 |
cagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagca |
83 |
Q |
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| T |
36672831 |
cagttgaagtgatggaaagatgtagctcttgaagttgtatcattgtgtgagaaagca |
36672887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 24202541 - 24202719
Alignment:
| Q |
25 |
cacagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcag--cgaaattgaatgggaaggttattcacac |
122 |
Q |
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|||||||||||||||| |||||||||| ||| |||| ||| | ||||||||||||||||||||| | || ||||||||| |||||||||||||||||| |
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| T |
24202541 |
cacagttgaagcgatgagaagatgcagcacttgaagccgtatccttgcgtgagaaagcacattcactaagagcgaaattgagtgggaaggttattcacac |
24202640 |
T |
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| Q |
123 |
aaactgccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgt |
201 |
Q |
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||| | |||||||||||||||| ||||| |||||||||| |||||| ||||| |||||||||| ||||||||||||||| |
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| T |
24202641 |
aaagttccctttcattttctttgtcaccgactttgtgataggtcttttacagcaatttatctagataatttgagtctgt |
24202719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 31 - 202
Target Start/End: Complemental strand, 29411049 - 29410876
Alignment:
| Q |
31 |
tgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcgaaa--ttgaatgggaaggttattcacacaaactg |
128 |
Q |
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|||||||||||||||||||||||||| |||||||| |||| ||||||||||| |||||| | || |||| |||| ||| |||||||||| || ||| | |
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| T |
29411049 |
tgaagcgatggaaagatgcagctcttgaagctgtatcattacgtgagaaagcgcattcactaagagaaaaattgagtggaaaggttattcgcataaagta |
29410950 |
T |
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| Q |
129 |
ccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
202 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| |||||||||| |||| ||||||||||| |||| |
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| T |
29410949 |
ccctttcattttctttctcgcctactttgtgataagtcttttacagaaattcatcttgataatttgagtttgtg |
29410876 |
T |
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