View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11438_low_32 (Length: 216)
Name: NF11438_low_32
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 38724190 - 38724377
Alignment:
| Q |
16 |
aaatattggagggaaagtatagaatagaataagataaaattgatactgttgaattttatctcattccattatttcttttataatataacagaacactgct |
115 |
Q |
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| T |
38724190 |
aaatattggagggaaagtatagaatagaataagataaaattgatcctgttgaattttatctcattccattatttcttttataatataacagaacactgct |
38724289 |
T |
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| Q |
116 |
tcatttcctattgggtcgaaagtagaacaagctgttgcggttcgcatcactgggaataaaactgccttttacaattgcacattctctg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38724290 |
tcatttcctattgggtcgaaagtagaacaagctgttgcggttcgcatcaccgggaataaaactgccttttacaattgcacattctctg |
38724377 |
T |
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