View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11438_low_34 (Length: 209)
Name: NF11438_low_34
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_low_34 |
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| [»] scaffold0057 (1 HSPs) |
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| [»] scaffold0313 (1 HSPs) |
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Alignment Details
Target: scaffold0057 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 55729 - 55905
Alignment:
| Q |
19 |
taaggaacttgtaatcaggaaattgaaagattaggagtaagaagggtgactgattatttgaggtaggagatgctaatctgttaatgaggtaagtagctgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55729 |
taaggaacttgtaatcaggaaattgaaagattaggagtaagaagggtgactgattatttgaggtaggagatgctaatctgttaatgaggtaa-tagctgt |
55827 |
T |
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| Q |
119 |
caggaaagcatggtcccaaaatttgaggggcattttggcttgtgctaagagagttaaaccagtttcaacaatatgcct |
196 |
Q |
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| T |
55828 |
caggaaagcatggtcccaaaatttgaggggcattttggcttgtgctaagagagttaaaccagtttcaacaatatgcct |
55905 |
T |
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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 25229748 - 25229926
Alignment:
| Q |
21 |
aggaacttgtaatcaggaaattgaaagattaggagtaagaagggtgactgattatttgagg-taggagatgctaatctgttaatgaggtaagtagctgtc |
119 |
Q |
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| T |
25229748 |
aggaatttataatcaggaaattgaaactttaagagaaaaaatggtgacttattgtt-gagactaggagaaggtagtctgttaatgagataagtagcagtc |
25229846 |
T |
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| Q |
120 |
aggaaagcatggtcccaaaatttgaggggcattttggcttgtgctaagagagttaaaccagtttcaacaatatgcctatg |
199 |
Q |
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| T |
25229847 |
aggaaagcatgatcccaaaatttgagaggcattttggcttgtgctaagagggttaaccctgtttcaacaatatgcctatg |
25229926 |
T |
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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 13730836 - 13730734
Alignment:
| Q |
97 |
tgttaatgaggtaagtagctgtcaggaaagcatggtcccaaaatttgaggggcattttggcttgtgctaagagagttaaaccagtttcaacaatatgcct |
196 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||| ||||| |
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| T |
13730836 |
tgttaatgagataagtagcagtcaggaaagcatggtcccaaaatttgagaggcattttggcttgtgctaagagggttaaccctgtttcaacaatgtgcct |
13730737 |
T |
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| Q |
197 |
atg |
199 |
Q |
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||| |
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| T |
13730736 |
atg |
13730734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 29459649 - 29459701
Alignment:
| Q |
149 |
cattttggcttgtgctaagagagttaaaccagtttcaacaatatgcctatgct |
201 |
Q |
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|||||| ||||| ||||| ||||||| |||| |||||||||||||||||||| |
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| T |
29459649 |
catttttgcttgagctaacagagttagaccaagttcaacaatatgcctatgct |
29459701 |
T |
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Target: scaffold0313 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0313
Description:
Target: scaffold0313; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 8688 - 8742
Alignment:
| Q |
147 |
ggcattttggcttgtgctaagagagttaaaccagtttcaacaatatgcctatgct |
201 |
Q |
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|||||||| ||||| ||||| ||||||| |||| |||||||||||||||||||| |
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| T |
8688 |
ggcatttttgcttgagctaacagagttagaccaagttcaacaatatgcctatgct |
8742 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 34768275 - 34768329
Alignment:
| Q |
147 |
ggcattttggcttgtgctaagagagttaaaccagtttcaacaatatgcctatgct |
201 |
Q |
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|||||||| ||||| ||||| ||||||| |||| |||||||||||||||||||| |
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| T |
34768275 |
ggcatttttgcttgagctaacagagttagaccaagttcaacaatatgcctatgct |
34768329 |
T |
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