View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11438_low_5 (Length: 495)
Name: NF11438_low_5
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 69 - 479
Target Start/End: Original strand, 44407578 - 44407966
Alignment:
| Q |
69 |
aacaagtatgatatttgtatactttcatatttccacgcttatttaacatctcatcttatcccatctctttttatacgacatcatcaaactatcacatttc |
168 |
Q |
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| T |
44407578 |
aacaagtatgatatttgtatactttcatatttccacgcttatttaacatctcatcttatcccatctctttttatacgacatcatcaaactatcacatttc |
44407677 |
T |
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| Q |
169 |
tttttctttgaaactttatacactcgaatgagtgtacaacaaacattttccaaaccataatcacaatatgtgttcatttagttcaaatttctatgtccat |
268 |
Q |
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| T |
44407678 |
tttttctttgaaactttatacactcgaatgagtgtacaacaaacattttccaaaccataatcacaatatgtgtacatttagttcaaatttctatgtcc-- |
44407775 |
T |
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| Q |
269 |
aaatgcaatcaaaaaataattctgcttgcgtttacacacagaggaaaagtacagtaaaataaaaagacgaaaagtacatctaatttagctaaaaagtagt |
368 |
Q |
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| T |
44407776 |
-------------------ttctgcttgcgtttacacacagaggaaaagtaaagtaaaataaaaagacgaaaagtacatctaatttagctaaaaagtagt |
44407856 |
T |
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| Q |
369 |
gagggaaagaaataaacgaatagttttatgataacattttaactacaattttaagttggtttgtcataaaacttgcatcatcattataatcaaagtttaa |
468 |
Q |
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| T |
44407857 |
gagggaaagaaataaatgaatagttttatgataacattttaactacaa-tttaagttggtttgtcataaaacttgcatcatcattataatcaaagtttaa |
44407955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 44407487 - 44407547
Alignment:
| Q |
16 |
gggaagcatccttctttatagcgattaaaaaatatatcaatcatctaaattacaacaagta |
76 |
Q |
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| T |
44407487 |
gggaagcatccttctttatagcgattaaaaaatatatcaatcatctaaattacaacaagta |
44407547 |
T |
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