View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11438_low_7 (Length: 438)
Name: NF11438_low_7
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 125 - 434
Target Start/End: Original strand, 35854966 - 35855275
Alignment:
| Q |
125 |
aagttgtgtacgtgaaaataggcaaattgaaaggctagtgtaaataagaacctttcaaataaagcgacattgtagcacacccttttacatcttcaaagga |
224 |
Q |
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| T |
35854966 |
aagttgtgtacgtgaaaataggcaaattgaaaggctagtgtaaataagaacctttcaaataaagcgacattgtagcacacccttttacatcttcaaagga |
35855065 |
T |
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| Q |
225 |
attaactcatttaagagtcattattgtattcaaagaaatcactcgtttgaagagtcattattatatatatcacaacgtacacacatttcatggaaatata |
324 |
Q |
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| T |
35855066 |
attaactcatttaagagtcattattgtattcaaagaaatcactcgtttgaagagtcattattatatatatcacaacgtacacacatttcatgcaaatata |
35855165 |
T |
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| Q |
325 |
ttctaaatattattaatttcaccatctcaacaataccagtgacattcacacaacatcatgatcataaatttattctctttggttattttagtgctcattc |
424 |
Q |
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| T |
35855166 |
ttctaaatattattaatttcaccatctcaacaataccagtgacattcacacaacatcatgatcataaatttattctctttggttattttattgctcattc |
35855265 |
T |
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| Q |
425 |
tctgctcctc |
434 |
Q |
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| T |
35855266 |
tttgttcctc |
35855275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 35854901 - 35854941
Alignment:
| Q |
17 |
acatactaggtaactttctatttcgaaagtaacttaaaaac |
57 |
Q |
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| T |
35854901 |
acatactaggtaactttctatttcgaaagtaacttaaaaac |
35854941 |
T |
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