View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11438_low_8 (Length: 432)
Name: NF11438_low_8
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11438_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 36067372 - 36067022
Alignment:
| Q |
1 |
tttgttgaagaagattttgttgctcgaagctatatattggctctacctgctaatccgcgtttgtataacgaagaacctgttgtcgatgatgataatgatg |
100 |
Q |
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| T |
36067372 |
tttgttgaagaagattttgttgctcgaagctatatattggctctacctgctaatccgcgtttgtataatgaagaacctgttgtcgatgatgataatgatg |
36067273 |
T |
|
| Q |
101 |
ctgctgatgaactttttgttgaagaggataatagtgatgatgatagtagcaactcaacatagtgccccaatgatat----gaacctttaagggacacttt |
196 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36067272 |
ttgctgatgaacttgttgttgaagaggataatagtgatgatgatagtagcaactcaacatagtgccccaatgatatatatgaacctttaagggacacttt |
36067173 |
T |
|
| Q |
197 |
aaacccaactttcaagagttgaaaattagttttaagaatatataatgagatttgggtgcatggcatgatgcccatttgctttgttttatttgatttaaat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36067172 |
aaacccaactttcaagagttgaaaattagttttaagaatatataatgagatttgggtgcatggcatgatgcccatttgctttgttttacttgatttaaat |
36067073 |
T |
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| Q |
297 |
tgtcataaaatgtgtggtcaagactttgtatgaattatgccaaacacttaa |
347 |
Q |
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| T |
36067072 |
tgtcataaaatgtgtggtcaagactttgtatgaattatgccaaacacttaa |
36067022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 416
Target Start/End: Complemental strand, 36066984 - 36066953
Alignment:
| Q |
385 |
gagcatgagagactcattacatatgtgcttcc |
416 |
Q |
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| T |
36066984 |
gagcatgagagactcattacatatgtgcttcc |
36066953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 85 - 213
Target Start/End: Complemental strand, 29024622 - 29024496
Alignment:
| Q |
85 |
gatgatgataatgatgctgctgatgaactttttgttgaagaggataatagtgatgatgatagtagcaactcaacatagtgccccaatgatatgaaccttt |
184 |
Q |
| |
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|||||||||||||||| ||||| |||||| ||||||||||||| | | ||||||||||||||||||||||||||||| | |||| |||||||||||| |
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| T |
29024622 |
gatgatgataatgatgtcgctgaagaacttgttgttgaagaggaagacatggatgatgatagtagcaactcaacatagtggctcaatcatatgaaccttt |
29024523 |
T |
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| Q |
185 |
aagggacactttaaacccaactttcaaga |
213 |
Q |
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|||| ||||||| | ||||||||||||| |
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| T |
29024522 |
aaggaacacttt--atccaactttcaaga |
29024496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 313
Target Start/End: Complemental strand, 31685599 - 31685485
Alignment:
| Q |
199 |
acccaactttcaagagttgaaaattagttttaagaatatataatgagatttgggtgcatggcatgatgcccatttgctttgttttatttgatttaaattg |
298 |
Q |
| |
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|||||| ||| |||||||||||||| |||| ||||||| | || || ||| | ||||| |||| ||| |||||| |||||||||||||||||| ||| |
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| T |
31685599 |
acccaatttttaagagttgaaaatttgtttcaagaataaagaacaaggcttgcgcgcatgacatgctgctaatttgcattgttttatttgatttaagttg |
31685500 |
T |
|
| Q |
299 |
tcataaaatgtgtgg |
313 |
Q |
| |
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| T |
31685499 |
taataaaatgtgtgg |
31685485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 48474551 - 48474599
Alignment:
| Q |
265 |
tgcccatttgctttgttttatttgatttaaattgtcataaaatgtgtgg |
313 |
Q |
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|||||||||||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
48474551 |
tgcccatttgctttgtttaatttgatttaagttgtaataaaatgtgtgg |
48474599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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