View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11438_low_9 (Length: 423)

Name: NF11438_low_9
Description: NF11438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11438_low_9
NF11438_low_9
[»] chr7 (10 HSPs)
chr7 (21-414)||(22524935-22525308)
chr7 (25-417)||(22534561-22534934)
chr7 (288-414)||(21218469-21218596)
chr7 (59-161)||(35205922-35206024)
chr7 (65-174)||(21210466-21210575)
chr7 (59-158)||(21218709-21218808)
chr7 (367-414)||(20057827-20057874)
chr7 (367-409)||(19645455-19645497)
chr7 (368-409)||(19358206-19358247)
chr7 (369-409)||(19350832-19350872)
[»] chr4 (1 HSPs)
chr4 (291-415)||(2911254-2911379)
[»] scaffold0128 (1 HSPs)
scaffold0128 (288-414)||(4319-4446)
[»] chr5 (2 HSPs)
chr5 (294-414)||(42298299-42298420)
chr5 (366-411)||(23087049-23087094)
[»] chr8 (1 HSPs)
chr8 (367-410)||(27618723-27618766)
[»] chr2 (4 HSPs)
chr2 (368-414)||(18908534-18908580)
chr2 (369-412)||(21021044-21021087)
chr2 (369-410)||(20712292-20712333)
chr2 (369-409)||(18913287-18913327)
[»] scaffold0242 (2 HSPs)
scaffold0242 (84-182)||(13707-13805)
scaffold0242 (84-182)||(22542-22640)
[»] chr6 (1 HSPs)
chr6 (371-409)||(6942715-6942753)
[»] scaffold0354 (1 HSPs)
scaffold0354 (95-160)||(7469-7534)
[»] scaffold0097 (1 HSPs)
scaffold0097 (369-410)||(16131-16172)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 21 - 414
Target Start/End: Complemental strand, 22525308 - 22524935
Alignment:
Q  21 accagtaccagaacatgtttgtgtcttgaagggcttactttgtttttatcatgatataaagggaaccgattttctgatatggcaaatgaaagaatttcga 120  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||  ||||||||    
T  22525308 accagtaccagaacatgtttgtgtcttgaagggcttcctttgtttttatcatgacataaagggaaccgattttatgatatggcaaatgaagaaatttcga 22525209  T
Q  121 gatgataagtcttggatcccgttccttaaatttagctatcaaaatattcaaatgaatcatgaagatcgagctatgaaatttttcgtagctcactgttaat 220  Q
    |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||  | |||||||||| |||||    
T  22525208 gat---aagtcttggatcccgttccttaaatttagctatcaaaatattcaaatgaatcatgaa--------------attggtagtagctcacttttaat 22525126  T
Q  221 attaagaccattattgcatctttctcagaatggggatacgctagtattgaaaagcaaccaagaagatcgagcaattctctataaccggagataactaaca 320  Q
    |||||||||||||   ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  22525125 attaagaccatta---catctttctgagaatggggatacgatagtattgaaaagcaaccaagaagatcgagcaattctctataaccggagagaactagca 22525029  T
Q  321 aagcaaagaaaactagaattaacaaaaagatacgttggttaatggtggattatgttgaaagcttggtttcaccttcttgaaagtaagttcttct 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22525028 aagcaaagaaaactagaattaacaaaaagatacgttggttaatggtggattatgttgaaagcttggtttcaacttcttgaaagtaagttcttct 22524935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 25 - 417
Target Start/End: Original strand, 22534561 - 22534934
Alignment:
Q  25 gtaccagaacatgtttgtgtcttgaagggcttactttgtttttatcatgatataaagggaaccgattttctgatatggcaaatgaaagaatttcgagatg 124  Q
    ||||| ||||||||||||||| |||||||| | ||||||||||||||||| |||||||||||||||||| | |||||||||||| | |||||| ||||||    
T  22534561 gtaccggaacatgtttgtgtcctgaagggcgtcctttgtttttatcatgacataaagggaaccgattttatcatatggcaaatggaggaatttggagatg 22534660  T
Q  125 ataagtcttggatcccgttccttaaatttagctatcaaaatattcaaatgaatcatgaagatcgagctatgaaatttttcgtagctcactgttaatatta 224  Q
    | ||||||||||  |  ||  || |||| |||||||||||||||  | |||||              ||||||||||||||||||||||| |||||||||    
T  22534661 aaaagtcttggacacaattagttcaattcagctatcaaaatattggagtgaat--------------tatgaaatttttcgtagctcacttttaatatta 22534746  T
Q  225 agaccattattgcatctttctcagaatggggatacgctagtattgaaaagcaaccaagaagatcgagcaattctctataaccggagataactaacaaagc 324  Q
    ||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||    
T  22534747 agaccatt---gcatctttctgagaatggggatacgctagtattgaaaagcaaccaagaagatcgagcaattctttataaccgga--taactaacaaagc 22534841  T
Q  325 aaagaaaactagaattaacaaaaagatacgttggttaatggtggattatgttgaaagcttggtttcaccttcttgaaagtaagttcttctctc 417  Q
    |||||||||||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  22534842 aaagaaaactagaattaacagaaagatacattggttaatggtcgattatgtcgaaagcttggtttcaccttcttgaaagtaagttcttatctc 22534934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 288 - 414
Target Start/End: Complemental strand, 21218596 - 21218469
Alignment:
Q  288 cgagcaattctctataaccggagataactaacaaagcaaagaaaactagaattaacaaaaagatacgttggttaatggtg---gattatgttgaaagctt 384  Q
    ||||| ||| |||||||||| |||  |||||||||| ||||||| |||||||||||||||||||| ||||||     ||    |||||||| ||||||||    
T  21218596 cgagcgattatctataaccgaaga--actaacaaagtaaagaaagctagaattaacaaaaagataagttggtcctcagtctatgattatgtcgaaagctt 21218499  T
Q  385 ggtttcaccttcttgaaagtaagttcttct 414  Q
    ||||||| ||||||||||||||||||||||    
T  21218498 ggtttcaacttcttgaaagtaagttcttct 21218469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 35206024 - 35205922
Alignment:
Q  59 tttgtttttatcatgatataaagggaaccgattttctgatatggcaaatgaaagaatttcgagatgataagtcttggatcccgttccttaaatttagcta 158  Q
    ||||||||||||||||| | || ||||| |||||| | |||||| | |||| ||||||| || |||| ||||||||||  |  |||||||||||||||||    
T  35206024 tttgtttttatcatgatttcaatggaactgattttgttatatggaagatgacagaatttggaaatgacaagtcttggactcaattccttaaatttagcta 35205925  T
Q  159 tca 161  Q
    |||    
T  35205924 tca 35205922  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 21210575 - 21210466
Alignment:
Q  65 tttatcatgatataaagggaaccgattttctgatatggcaaatgaaagaatttcgagatgataagtcttggatcccgttccttaaatttagctatcaaaa 164  Q
    ||||||||||| | || ||||| |||||| | |||||| | |||| | | ||| ||||||| ||||||||||  |  |||||||||||||||||||| ||    
T  21210575 tttatcatgatttcaacggaactgattttgttatatggaagatgacaaagtttggagatgacaagtcttggactctattccttaaatttagctatcacaa 21210476  T
Q  165 tattcaaatg 174  Q
    ||||||||||    
T  21210475 tattcaaatg 21210466  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 21218808 - 21218709
Alignment:
Q  59 tttgtttttatcatgatataaagggaaccgattttctgatatggcaaatgaaagaatttcgagatgataagtcttggatcccgttccttaaatttagcta 158  Q
    ||||||||||||| ||| | || ||||| |||||  | |||||||||||||  |||||| ||||||||||||||||||  |  ||||| |||||||||||    
T  21218808 tttgtttttatcacgatttcaatggaactgatttggttatatggcaaatgacggaatttggagatgataagtcttggactcaattcctcaaatttagcta 21218709  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 367 - 414
Target Start/End: Complemental strand, 20057874 - 20057827
Alignment:
Q  367 ggattatgttgaaagcttggtttcaccttcttgaaagtaagttcttct 414  Q
    |||||||||||||||||||| |||| ||| |||| |||||||||||||    
T  20057874 ggattatgttgaaagcttggcttcaacttgttgatagtaagttcttct 20057827  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 19645497 - 19645455
Alignment:
Q  367 ggattatgttgaaagcttggtttcaccttcttgaaagtaagtt 409  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||    
T  19645497 ggattatgttgaaagtttggtttcaacttgttgaaagtaagtt 19645455  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 409
Target Start/End: Original strand, 19358206 - 19358247
Alignment:
Q  368 gattatgttgaaagcttggtttcaccttcttgaaagtaagtt 409  Q
    ||||||||||||||||| |||||| | |||||||||||||||    
T  19358206 gattatgttgaaagcttagtttcatcctcttgaaagtaagtt 19358247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 19350872 - 19350832
Alignment:
Q  369 attatgttgaaagcttggtttcaccttcttgaaagtaagtt 409  Q
    |||||||||||||||| |||||| | |||||||||||||||    
T  19350872 attatgttgaaagcttagtttcaacctcttgaaagtaagtt 19350832  T

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Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 291 - 415
Target Start/End: Original strand, 2911254 - 2911379
Alignment:
Q  291 gcaattctctataaccggagataactaacaaagcaaagaaaactagaattaacaaaaagatacgttggtt---aatggtggattatgttgaaagcttggt 387  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||||| |||| | ||||||||||||    |||   |||||||| |||||||||||    
T  2911254 gcaattctctataaccggaga--actaacagagcaaagaaaactagaattgacaacaggatacgttggttttctatgaacgattatgtagaaagcttggt 2911351  T
Q  388 ttcaccttcttgaaagtaagttcttctc 415  Q
     ||| |||||||||||||||||||||||    
T  2911352 atcaacttcttgaaagtaagttcttctc 2911379  T

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Target: scaffold0128 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 288 - 414
Target Start/End: Original strand, 4319 - 4446
Alignment:
Q  288 cgagcaattctctataaccggagataactaacaaagcaaagaaaactagaattaacaaaaagatacgttggtt---aatggtggattatgttgaaagctt 384  Q
    ||||| ||||| ||||||| ||||  || ||||||||||||||||||| | | ||||||||||||||||||||   ||||   |||||||| ||||||||    
T  4319 cgagcgattctttataacctgaga--acaaacaaagcaaagaaaactacattcaacaaaaagatacgttggttcccaatgaaagattatgtcgaaagctt 4416  T
Q  385 ggtttcaccttcttgaaagtaagttcttct 414  Q
    ||||||| ||||||||||||||||||||||    
T  4417 ggtttcaacttcttgaaagtaagttcttct 4446  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 294 - 414
Target Start/End: Original strand, 42298299 - 42298420
Alignment:
Q  294 attctctataaccggagataactaacaaagcaaagaaaactagaattaacaaaaagatacgttggtt---aatggtggattatgttgaaagcttggtttc 390  Q
    ||||||||||||| ||||  || |||| ||||||||||||||| ||||||| ||||||| ||||||    ||||   |||||||| ||||||||||||||    
T  42298299 attctctataacctgaga--acaaacagagcaaagaaaactaggattaacagaaagatatgttggtcctcaatgaaagattatgtcgaaagcttggtttc 42298396  T
Q  391 accttcttgaaagtaagttcttct 414  Q
    | ||||||||||||||||||||||    
T  42298397 aacttcttgaaagtaagttcttct 42298420  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 23087049 - 23087094
Alignment:
Q  366 tggattatgttgaaagcttggtttcaccttcttgaaagtaagttct 411  Q
    |||||||||||||||||||||||||  ||| ||| |||||||||||    
T  23087049 tggattatgttgaaagcttggtttcgacttgttggaagtaagttct 23087094  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 410
Target Start/End: Original strand, 27618723 - 27618766
Alignment:
Q  367 ggattatgttgaaagcttggtttcaccttcttgaaagtaagttc 410  Q
    |||||||||||||||||||||||||  |||||||||||||||||    
T  27618723 ggattatgttgaaagcttggtttcaatttcttgaaagtaagttc 27618766  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 414
Target Start/End: Complemental strand, 18908580 - 18908534
Alignment:
Q  368 gattatgttgaaagcttggtttcaccttcttgaaagtaagttcttct 414  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||    
T  18908580 gattatgttgaaagcttggtttcaacctcttgaaagtaagtttttct 18908534  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 21021087 - 21021044
Alignment:
Q  369 attatgttgaaagcttggtttcaccttcttgaaagtaagttctt 412  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||||    
T  21021087 attatgttgaaagtttggtttcaacttgttgaaagtaagttctt 21021044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 20712333 - 20712292
Alignment:
Q  369 attatgttgaaagcttggtttcaccttcttgaaagtaagttc 410  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||    
T  20712333 attatgtcgaaagcttggtttcaacttgttgaaagtaagttc 20712292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 18913327 - 18913287
Alignment:
Q  369 attatgttgaaagcttggtttcaccttcttgaaagtaagtt 409  Q
    ||||||||||||||||||| ||| | |||||||||||||||    
T  18913327 attatgttgaaagcttggtatcaacctcttgaaagtaagtt 18913287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 13805 - 13707
Alignment:
Q  84 aaccgattttctgatatggcaaatgaaagaatttcgagatgataagtcttggatcccgttccttaaatttagctatcaaaatattcaaatgaatcatga 182  Q
    |||||||||||| |||||||| ||||| |||||  || ||||| | |||||||  | ||| |||||| | || ||||||||| ||||||| ||||||||    
T  13805 aaccgattttcttatatggcagatgaaggaattaggaaatgatgaatcttggactcagtttcttaaaataaggtatcaaaatcttcaaataaatcatga 13707  T

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Target: scaffold0242; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 22640 - 22542
Alignment:
Q  84 aaccgattttctgatatggcaaatgaaagaatttcgagatgataagtcttggatcccgttccttaaatttagctatcaaaatattcaaatgaatcatga 182  Q
    |||||||||||| |||||||| ||||| |||||  || ||||| | |||||||  | ||| |||||| | || ||||||||| ||||||| ||||||||    
T  22640 aaccgattttcttatatggcagatgaaggaattaggaaatgatgaatcttggactcagtttcttaaaataaggtatcaaaatcttcaaataaatcatga 22542  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 409
Target Start/End: Complemental strand, 6942753 - 6942715
Alignment:
Q  371 tatgttgaaagcttggtttcaccttcttgaaagtaagtt 409  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  6942753 tatgttgaaagcttggtatcaacttcttgaaagtaagtt 6942715  T

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Target: scaffold0354 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 7469 - 7534
Alignment:
Q  95 tgatatggcaaatgaaagaatttcgagatgataagtcttggatcccgttccttaaatttagctatc 160  Q
    |||||||||||||||| |||||| ||| |||| |||||||| | |  ||||||||| |||||||||    
T  7469 tgatatggcaaatgaaggaatttggagttgatgagtcttgggttcaattccttaaaattagctatc 7534  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 16172 - 16131
Alignment:
Q  369 attatgttgaaagcttggtttcaccttcttgaaagtaagttc 410  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||    
T  16172 attatgtcgaaagcttggtttcaacttgttgaaagtaagttc 16131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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