View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11439_high_2 (Length: 844)
Name: NF11439_high_2
Description: NF11439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11439_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 715; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 5 - 779
Target Start/End: Original strand, 36357430 - 36358204
Alignment:
| Q |
5 |
ttccagtctcattgcggatccctgctgcaccggatgcataattaacaccttgaactatgtctgcaccatgggtatttgcataaggtgggataaaatggtc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36357430 |
ttccagtctcattgcggatccctgctgcaccggatgcataattaacaccttgaactatgtctgcaccatgggtatttgcataaggtgggataaaatggtc |
36357529 |
T |
|
| Q |
105 |
aaatcccaaaagttcagctgcaatagtagaattcttggatcaatataaatgcaccaagaaagttgattaaagaatggcacaaaaataaaatgcaaaaata |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36357530 |
aaatcccaaaagttcagctgcaatagtagaattcttggatcaatataaatgcaccaagaaagttgattaaagaatggcacaaaattaaaatgcaaaaata |
36357629 |
T |
|
| Q |
205 |
tgtgtatgtgaatctataattttccttgttatcaaaatttaggaaacacttaacacaattcaaaaccatgtcctaaatttgaatctaggattgtcgaagg |
304 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36357630 |
tgtgtatgtaaatctataattttccttgttatcaaaatttaggaaacacttaacacaattcaaaaccatgtcctaaatttgaatctaggattgtcgaagg |
36357729 |
T |
|
| Q |
305 |
tgcttaattaatcttagaatttagaccgaacttaattcaaatgttacaaaacataagatgaaaaccgtccgcaacttataaacatattttcaaactatat |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36357730 |
tgcttaattaatcttagaatttagaccgaacttaattcaaatgttacaaaacataagatgagaaccgtccgcaacttataaacatattttcaaactatat |
36357829 |
T |
|
| Q |
405 |
ctcgtccaatatgaaacttgtcaacataaatatattcaaagtatgagaaaatattactgattatgtcaactgaagtacggccattggtaaatcttccggt |
504 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36357830 |
ctcgtccaatataaaacttgtcaacataaatatattcaaagtgtgagaaaatattactgattatgtcaattgaagtacggccattggtaaatcttccggt |
36357929 |
T |
|
| Q |
505 |
aggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgtctgataaagaatctccaaaa |
604 |
Q |
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| T |
36357930 |
aggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgtctgataaagaatctccaaaa |
36358029 |
T |
|
| Q |
605 |
atgaaaagacatggtacttggggcttcccaacaacacaatatgttgcacttgagaagaagaaaaacaccatccataacttagtcttatgatccatatcnn |
704 |
Q |
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| T |
36358030 |
atgaaaagacatggtacttggggcttcccaacaacacaatatgttgcacttgagaagaagaaaaacaccatccataacttagtcttatgatccatatcaa |
36358129 |
T |
|
| Q |
705 |
nnnnnnnnnntgtcaaaagtttgttctgatccaaaatatttggaatccaagcacaagatttgcaggtgtagctaa |
779 |
Q |
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| T |
36358130 |
aaagaaaaaatgtcaaaagtttgttctgatccaaaatatttggaatccaagcacaagatttgcaggtgtagctaa |
36358204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 796 - 827
Target Start/End: Original strand, 36358219 - 36358250
Alignment:
| Q |
796 |
agagatgaaagacaaaaatttgtatgaccttg |
827 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
36358219 |
agagatgaaagacaaaaatttgtatgaccttg |
36358250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 9e-17; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 458 - 603
Target Start/End: Original strand, 5573428 - 5573573
Alignment:
| Q |
458 |
ttactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcgg |
557 |
Q |
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||||| |||||||||| || ||| | || ||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||| ||| ||| || |
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| T |
5573428 |
ttacttattatgtcaattgcagttctaccgttggtaaatcttccggttggacccatcggaaagtcaattccataaggtttgtaattagattttgcagagg |
5573527 |
T |
|
| Q |
558 |
tagctaggttattgttgtttccactgtctgataaagaatctccaaa |
603 |
Q |
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| T |
5573528 |
taggaaggttattgttgtttccactatcagataaagaatctccaaa |
5573573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 459 - 626
Target Start/End: Original strand, 5576591 - 5576758
Alignment:
| Q |
459 |
tactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggt |
558 |
Q |
| |
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|||| |||||||||| |||||| || || ||||||||||||||||| || || || || ||||| |||||||| |||||||| ||| ||| ||| |
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| T |
5576591 |
tacttattatgtcaattgaagttcgaccgttggtaaatcttccggttgggcccatcgggaagtcaattccataaggtttgtaattagattttgcagaggt |
5576690 |
T |
|
| Q |
559 |
agctaggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
626 |
Q |
| |
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| T |
5576691 |
gggaaggttgttattgtttccactatcagataaagaatctccaaagataaaaagacatggcacttggg |
5576758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 458 - 626
Target Start/End: Original strand, 5586959 - 5587127
Alignment:
| Q |
458 |
ttactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcgg |
557 |
Q |
| |
|
|||||||||||||||| |||||| || || |||||||||||||| || || || ||||| || || ||||| || |||||||| ||| ||| || |
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| T |
5586959 |
ttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcggaaagtcgattccatagggattgtaattagattttgcagagg |
5587058 |
T |
|
| Q |
558 |
tagctaggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
626 |
Q |
| |
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||| |||||||||||||||||||| || |||||||| |||||||| || || ||||| || ||||||| |
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| T |
5587059 |
taggaaggttattgttgtttccactatcagataaagagtctccaaagataaatagacaaggcacttggg |
5587127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 626
Target Start/End: Original strand, 5593300 - 5593363
Alignment:
| Q |
563 |
aggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
626 |
Q |
| |
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||||| ||||||||||||| || ||||||||||||||||| || |||||||| || ||||||| |
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| T |
5593300 |
aggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagacaaggaacttggg |
5593363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 624
Target Start/End: Original strand, 7017571 - 7017710
Alignment:
| Q |
485 |
ccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgt |
584 |
Q |
| |
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||||| ||||| ||||| || ||||| | |||||||| || ||||| || ||||||||||||| ||| ||| | || | ||||||||||||||||| |
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| T |
7017571 |
ccattagtaaaccttcctgttggacctgtcggaaaatcgatgccatatggtttgtaattaacttttgcagttgtaacaagatcattgttgtttccactgt |
7017670 |
T |
|
| Q |
585 |
ctgataaagaatctccaaaaatgaaaagacatggtacttg |
624 |
Q |
| |
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| T |
7017671 |
cagataaagagtcaccaaaaacaaaaagacaaggcacttg |
7017710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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