View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11439_high_5 (Length: 539)

Name: NF11439_high_5
Description: NF11439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11439_high_5
NF11439_high_5
[»] chr4 (4 HSPs)
chr4 (19-272)||(4167038-4167295)
chr4 (273-523)||(4166691-4166957)
chr4 (24-89)||(4174212-4174277)
chr4 (418-450)||(8810859-8810891)
[»] chr7 (2 HSPs)
chr7 (311-361)||(46723130-46723180)
chr7 (419-452)||(40013268-40013301)
[»] chr5 (2 HSPs)
chr5 (418-452)||(28489187-28489221)
chr5 (419-452)||(972685-972718)
[»] chr3 (3 HSPs)
chr3 (420-452)||(10511228-10511260)
chr3 (419-452)||(10514552-10514585)
chr3 (419-452)||(10661988-10662021)
[»] chr2 (2 HSPs)
chr2 (418-452)||(43691092-43691126)
chr2 (419-452)||(4793751-4793784)
[»] chr8 (1 HSPs)
chr8 (419-452)||(25063344-25063377)
[»] chr6 (2 HSPs)
chr6 (419-452)||(9297761-9297794)
chr6 (419-452)||(9727499-9727532)
[»] chr1 (1 HSPs)
chr1 (419-452)||(10430430-10430463)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 4167295 - 4167038
Alignment:
Q  19 tacagatttcacgagatcaccaaactgtagaaaagaattaggaatattaataagggagagaaatataagtgcttaagttatcaaagattaatatgttagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4167295 tacagatttcacgagatcaccaaactgtagaaaagaattaggaatattaataagggagagaaatataagtgtttaagttatcaaagattaatatgttagt 4167196  T
Q  119 taagnnnnnnnnn----gttactaacatcagcattcacatattggccattcacaaggagccaaggtgtgtgagtaagaggtggatttagccaatttgttt 214  Q
    ||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4167195 taagaaaaaaaaaaaaagttactaacatcagcattcacatattggccattcacaaggagccaaggtgtgtgagtaagaggtggatttagccaatttgttt 4167096  T
Q  215 ctctaccattgtgtctatggagctgcattgtcaaattttagcatagaattagtaagag 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4167095 ctctaccattgtgtctatggagctgcattgtcaaattttagcatagaattagtaagag 4167038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 273 - 523
Target Start/End: Complemental strand, 4166957 - 4166691
Alignment:
Q  273 agtaaacatgaaattaatcttaattttttcgtgtaaaaacttaatgttacgaagcaaccaaaaaacaaaatgcacgaaagtaatctcatt---------- 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||              
T  4166957 agtaaacatgaaattaatcttaattttttcgtgtaaaaacttaatgttacgaagcaaccaaaaaacaaaatgcgcgaaagtaatctcattcataattttt 4166858  T
Q  363 ------aacacattcatgattgccataaatataaaaaataatagtttctaaattatacatttaatttcggcatttttgtcagttgaactaggacttttaa 456  Q
          ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||    
T  4166857 tatcaaaacacattcatgattgccataaaaataaaaaataatagtttttaaattatacatttaatttcggcatttttgtccgttgagctgggacttttaa 4166758  T
Q  457 ttaacataaatatgcattcaatactaaatgagttatagtcttatagatgacaaaaaattgagatatg 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4166757 ttaacataaatatgcattcaatactaaatgagttatagtcttatagatgacaaaaaattgagatatg 4166691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 4174277 - 4174212
Alignment:
Q  24 atttcacgagatcaccaaactgtagaaaagaattaggaatattaataagggagagaaatataagtg 89  Q
    ||||||| |||||| ||| ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  4174277 atttcactagatcatcaacctgtagaaaagaattaggaatgttaataagggagagaaatttaagtg 4174212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 450
Target Start/End: Original strand, 8810859 - 8810891
Alignment:
Q  418 taatttcggcatttttgtcagttgaactaggac 450  Q
    ||||||||||||||||||||||||| |||||||    
T  8810859 taatttcggcatttttgtcagttgagctaggac 8810891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 46723130 - 46723180
Alignment:
Q  311 acttaatgttacgaagcaaccaaaaaacaaaatgcacgaaagtaatctcat 361  Q
    |||||||||||||||||||||||||||| ||||||| ||| || |||||||    
T  46723130 acttaatgttacgaagcaaccaaaaaacgaaatgcatgaaggtgatctcat 46723180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 40013301 - 40013268
Alignment:
Q  419 aatttcggcatttttgtcagttgaactaggactt 452  Q
    |||||||||||||||||||||||| |||||||||    
T  40013301 aatttcggcatttttgtcagttgagctaggactt 40013268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 452
Target Start/End: Complemental strand, 28489221 - 28489187
Alignment:
Q  418 taatttcggcatttttgtcagttgaactaggactt 452  Q
    |||||||||||||||||||||||||||||||||||    
T  28489221 taatttcggcatttttgtcagttgaactaggactt 28489187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 972685 - 972718
Alignment:
Q  419 aatttcggcatttttgtcagttgaactaggactt 452  Q
    ||||||| ||||||||||||||||||||||||||    
T  972685 aatttcgacatttttgtcagttgaactaggactt 972718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 452
Target Start/End: Complemental strand, 10511260 - 10511228
Alignment:
Q  420 atttcggcatttttgtcagttgaactaggactt 452  Q
    |||||||||||||||||||||||||||||||||    
T  10511260 atttcggcatttttgtcagttgaactaggactt 10511228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 10514585 - 10514552
Alignment:
Q  419 aatttcggcatttttgtcagttgaactaggactt 452  Q
    |||||||||||||||||| |||||||||||||||    
T  10514585 aatttcggcatttttgtctgttgaactaggactt 10514552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 10662021 - 10661988
Alignment:
Q  419 aatttcggcatttttgtcagttgaactaggactt 452  Q
    |||||||||||||||||||||||||||| |||||    
T  10662021 aatttcggcatttttgtcagttgaactatgactt 10661988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 452
Target Start/End: Complemental strand, 43691126 - 43691092
Alignment:
Q  418 taatttcggcatttttgtcagttgaactaggactt 452  Q
    ||||||||||||||||||||||||||||| |||||    
T  43691126 taatttcggcatttttgtcagttgaactaagactt 43691092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 4793784 - 4793751
Alignment:
Q  419 aatttcggcatttttgtcagttgaactaggactt 452  Q
    |||||| |||||||||||||||||||||||||||    
T  4793784 aatttcagcatttttgtcagttgaactaggactt 4793751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 25063377 - 25063344
Alignment:
Q  419 aatttcggcatttttgtcagttgaactaggactt 452  Q
    |||||||||||||||| |||||||||||||||||    
T  25063377 aatttcggcatttttgccagttgaactaggactt 25063344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 9297794 - 9297761
Alignment:
Q  419 aatttcggcatttttgtcagttgaactaggactt 452  Q
    ||||||| ||||||||||||||||||||||||||    
T  9297794 aatttcgacatttttgtcagttgaactaggactt 9297761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 9727532 - 9727499
Alignment:
Q  419 aatttcggcatttttgtcagttgaactaggactt 452  Q
    ||||||| ||||||||||||||||||||||||||    
T  9727532 aatttcgacatttttgtcagttgaactaggactt 9727499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 10430430 - 10430463
Alignment:
Q  419 aatttcggcatttttgtcagttgaactaggactt 452  Q
    |||||||||||||||||||||||| |||||||||    
T  10430430 aatttcggcatttttgtcagttgagctaggactt 10430463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University