View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11439_low_4 (Length: 546)
Name: NF11439_low_4
Description: NF11439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11439_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Complemental strand, 39552666 - 39552136
Alignment:
| Q |
1 |
aagacttgttagacttgctgaagaagacaatgaaaagtttttgctcaaactcaaggatcgaatcgacaggttaaaattcaannnnnnngtccttgctttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39552666 |
aagacttgttagacttgctgaagaagacaatgaaaagtttttgctcaaactcaaggatcgaatcgacaggttaaaattcaatttttttgtccttgctttt |
39552567 |
T |
|
| Q |
101 |
acaagaagtgcttttgaaatgcactaattaattttcttatcattgttttcttcttccttggatgatatcagagtaggaattgatcttcctacaatagagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39552566 |
acaagaagtgcttttgaaatgcactaattaattttcttatcattgttttcttcttccttggatgatatcagagtaggaattgatcttcctacaatagagg |
39552467 |
T |
|
| Q |
201 |
ttcgattcgagggcttgaatatcgaagcagaagctcatgtaggaaataggtctttgcctaccttcactaacttcatggttaatatagtgggggtaaataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39552466 |
ttcgattcgagggcttgaatatcgaagcagaagctcatgtaggaaataggtctttgcctaccttcactaacttcatggttaatatagtggaggtaaataa |
39552367 |
T |
|
| Q |
301 |
tcaactctcataaatagtactaactttctatgtggtattttattgaagggtattctaactaaacaatatggnnnnnnnncttcaacattttaattgtaca |
400 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39552366 |
tcaactctgataaatagtactaactttctatgtggtattttattgaagggtattctaactaaacaatatggttttttttcttcaacattttaattgtaca |
39552267 |
T |
|
| Q |
401 |
gggcctgttgaactctcttcatgtacttccaagtagaaaacaacatctaaatattctcaaggatgttagtggaatattaaagccttcaaggtatcaatac |
500 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39552266 |
gggcctgttgaattctcttcatgtacttccaagtagaaaacaacatctaaatattctcaaggatgttagtggaatattaaagccttcaaggtatcaatac |
39552167 |
T |
|
| Q |
501 |
aaatactattctattcattgattgaactata |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
39552166 |
aaatactattctattcattgattgaactata |
39552136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 39569504 - 39569003
Alignment:
| Q |
1 |
aagacttgttagacttgctgaagaagacaatgaaaagtttttgctcaaactcaaggatcgaatcgacaggttaaaattcaannnnnnngtccttgc--tt |
98 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||| |||||||| | ||| | ||||||| || |
|
|
| T |
39569504 |
aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttcagattttaaaaaactgtccttgtggtt |
39569405 |
T |
|
| Q |
99 |
ttacaagaagtgcttttgaaatgcactaattaattttcttatcattgttttcttcttccttggatgatatcagagtaggaattgatcttcctacaataga |
198 |
Q |
| |
|
||| |||||||||||||||||| |||| ||| ||| |||| | || ||| || ||| |||||| || ||||||| ||| ||||||||||||||||||| |
|
|
| T |
39569404 |
ttaaaagaagtgcttttgaaatacactgatttctttgcttaccgttccttttttgttcattggataatgtcagagttggagttgatcttcctacaataga |
39569305 |
T |
|
| Q |
199 |
ggttcgattcgagggcttgaatatcgaagcagaagctcatgtaggaaataggtctttgcctaccttcactaacttcatggttaatatagtgggggtaaat |
298 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
39569304 |
agttcgattcgaacacctgaatatcgaagcagaagctcgtgtaggaagcagatctttgcctaccttcactaacttcatggttaatatagtagaggtaaat |
39569205 |
T |
|
| Q |
299 |
aatcaactctcataaatagtactaactttctatgtggtattttattgaagggtattctaactaaacaatatggnnnnnnnncttcaacattttaattgta |
398 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| | |||| |||||||| |||||||||||||| | ||| ||| ||||||||||| || |
|
|
| T |
39569204 |
aatcaactatcataaatagtacta----gctatgtgatgttttgttgaaggggattctaactaaacattttgg-tttcttacttttacattttaatttta |
39569110 |
T |
|
| Q |
399 |
cagggcctgttgaactctcttcatgtacttccaagtagaaaacaacatctaaatattctcaaggatgttagtggaatattaaagccttcaaggtatcaat |
498 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39569109 |
aagggcctattgaactctcttcatgtacttccaagtagaaaacaacatctaaatattctcagggatgttagtggaatattaaagccttcaaggtatcaaa |
39569010 |
T |
|
| Q |
499 |
acaaata |
505 |
Q |
| |
|
||||||| |
|
|
| T |
39569009 |
acaaata |
39569003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 136 - 523
Target Start/End: Original strand, 39359013 - 39359401
Alignment:
| Q |
136 |
cttatcattgttttcttcttccttggatgatatcagagtaggaattgatcttcctacaatagaggttcgattcgagggcttgaatatcgaagcagaagct |
235 |
Q |
| |
|
||||||||| ||||||| ||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| ||| | ||||||||| | ||||||||| |
|
|
| T |
39359013 |
cttatcattcttttcttgttcattggatgaaatcagagttggaattgatcttcctacgatagaggttcgatttgagcgtttgaatatcaatgcagaagct |
39359112 |
T |
|
| Q |
236 |
catgtaggaaataggtctttgcctaccttcactaacttcatggttaatatagtgggggtaaa-taatcaactctcataaatagtactaactttctatgtg |
334 |
Q |
| |
|
| |||||||| || |||||||||||||||||||||||||||||||||||||| | |||||| || | || | | | ||||| ||||||||| ||||||| |
|
|
| T |
39359113 |
cgtgtaggaagcagatctttgcctaccttcactaacttcatggttaatatagtagaggtaaagtactaaaatttga-aaataatactaacttgctatgtg |
39359211 |
T |
|
| Q |
335 |
gtattttat--tgaagggtattctaactaaacaatatggnnnnnnnncttcaacattttaattgtacagggcctgttgaactctcttcatgtacttccaa |
432 |
Q |
| |
|
| |||||| ||||||| |||||||||||||| | ||| ||| ||||||||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
39359212 |
attttttatattgaaggggattctaactaaacattttggtttattt-cttttacattttaattttaaagggcatgttgaactctcttcatgtacttccaa |
39359310 |
T |
|
| Q |
433 |
gtagaaaacaacatctaaatattctcaaggatgttagtggaatattaaagccttcaaggtatcaatacaaatactattctattcattgatt |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| || |||||| ||||||||| ||||| |
|
|
| T |
39359311 |
gtagaaaacaacatctaaatattctcaaggatgttagtggaataataaagccatcaaggtatcattagaaatacatttctattcactgatt |
39359401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 39344305 - 39344841
Alignment:
| Q |
1 |
aagacttgttagacttgctgaagaagacaatgaaaagtttttgctcaaactcaaggatcgaatcgacaggttaaaattcaannnnnnngt---cctt--- |
94 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||| || |||||||| |||||||| | ||| |
|
|
| T |
39344305 |
aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgcatggacaggttcaaattcaattttattttgttcctcagg |
39344404 |
T |
|
| Q |
95 |
-gcttttacaagaagtgcttttgaaatgcactaattaattttcttatcattgttttcttcttccttggatgatatcagagtaggaattgatcttcctaca |
193 |
Q |
| |
|
| | ||| |||| |||||||| |||| |||||||| ||| ||||||||| ||||||| ||| ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
39344405 |
ggatgttaaaaga-gtgcttttaaaatacactaatttctttgcttatcattcttttcttgttcattg-atgatatcagagttggaattgatcttcctacc |
39344502 |
T |
|
| Q |
194 |
atagaggttcgattcgagggcttgaatatcgaagcagaagctcatgtaggaaataggtctttgcctaccttcactaacttcatggttaatatagtggggg |
293 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
39344503 |
atagaggttcgattcgagcatttgaatatcgaagcagaagctcatgtaggaagcatatctttgcctaccttcactaacttcatggttaatatagtagagg |
39344602 |
T |
|
| Q |
294 |
taaa-taatcaactctcataaatagtactaactttctatgtggtattt----tattgaagggtattctaactaaacaatatgg-nnnnnnnncttcaaca |
387 |
Q |
| |
|
|||| || | || | | | ||||||||||||||| ||||||| | ||| |||||||||| |||||||||||||| | ||| || ||| |
|
|
| T |
39344603 |
taaagtactaaaatttga-aaatagtactaacttgctatgtgattttttttatattgaaggggattctaactaaacattttggtttctgttttttttaca |
39344701 |
T |
|
| Q |
388 |
ttttaat----tgtacagggcctgttgaactctcttcatgtacttccaagtagaaaacaacatctaaatattctcaaggatgttagtggaatattaaagc |
483 |
Q |
| |
|
||||||| | || || | || |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39344702 |
ttttaattaactttaaagagtctattgaactctcttcatgtacttccaagtagaaagcaacgtctaaatattctcaaggatgttagtggaataataaagc |
39344801 |
T |
|
| Q |
484 |
cttcaaggtatcaatacaaatactattctattcattgatt |
523 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
39344802 |
cttcaaggtatcaatacatttactgttccattcattgatt |
39344841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 39543443 - 39543154
Alignment:
| Q |
1 |
aagacttgttagacttgctgaagaagacaatgaaaagtttttgctcaaactcaaggatcgaatcgacaggttaaaattcaannnnnnngtccttgctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || || ||| |
|
|
| T |
39543443 |
aagacttgttagacttgctgaagaggacaatgagaagtttttgctcaaactcaaggatcgaatcgacaggttcgaattcaattttccc-tcttttgattt |
39543345 |
T |
|
| Q |
101 |
acaagaag--tgcttttgaaatgcactaattaattttcttatcattgttttcttcttccttgg-atgatatcagagtaggaattgatcttcctacaatag |
197 |
Q |
| |
|
| || ||| |||||||||||| || | ||| |||||||| |||| |||||||||| ||||| ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
39543344 |
aaaaaaagaatgcttttgaaatacattgatttattttcttgtcatcattttcttctttcttgggatgatatcagagttggaattgatcttcctacgatag |
39543245 |
T |
|
| Q |
198 |
aggttcgattcgagggcttgaatatcgaagcagaagctcatgtaggaaataggtctttgcctaccttcactaacttcatggttaatatagt |
288 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39543244 |
aggttcgattcgagcacctgaatatcgaagcagaagctaatgtaggaagcaggtctttgcctaccttcactaacttcatggttaatatagt |
39543154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 39333035 - 39333407
Alignment:
| Q |
1 |
aagacttgttagacttgctgaagaagacaatgaaaagtttttgctcaaactcaaggatcgaatcgacaggttaaaattcaannnnnnn---gtccttgc- |
96 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
39333035 |
aagacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttcggattcaaaaaatattttgtccttgtg |
39333134 |
T |
|
| Q |
97 |
-ttttacaagaagtgcttttgaaatgcactaattaattttcttatcattgttttcttc-ttccttggatgatatcagagtaggaattgatcttcctacaa |
194 |
Q |
| |
|
||||| ||||| |||||||||||| |||| ||| ||| ||| || | |||| || ||| ||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
39333135 |
attttaaaagaaatgcttttgaaatacactgatttctttgcttctcctccttttttttgttcattggatgatgtcagagttggaattgatcttcctacaa |
39333234 |
T |
|
| Q |
195 |
tagaggttcgattcgagggcttgaatatcgaagcagaagctcatgtaggaaataggtctttgcctaccttcactaacttcatggttaatatagtgggggt |
294 |
Q |
| |
|
|||| |||||||||||| | | ||||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
39333235 |
tagaagttcgattcgagcacctcaatattgaagcagaagctcgtgtaggaagcagatctttgcctaccttcactaacttcatggttaatatagtagaggt |
39333334 |
T |
|
| Q |
295 |
aaa-taatcaactctcataaatagtactaactttctatgtggtattt--tattgaagggtattctaactaaaca |
365 |
Q |
| |
|
||| || | || | | | ||||||||||||||| ||||||| | ||| |||||||||| |||||||||||||| |
|
|
| T |
39333335 |
aaagtactaaaatttga-aaatagtactaacttgctatgtgattttttatattgaaggggattctaactaaaca |
39333407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 400 - 523
Target Start/End: Complemental strand, 39543025 - 39542902
Alignment:
| Q |
400 |
agggcctgttgaactctcttcatgtacttccaagtagaaaacaacatctaaatattctcaaggatgttagtggaatattaaagccttcaaggtatcaata |
499 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| || || |
|
|
| T |
39543025 |
agggcctattgaactctcttcatgtgcttccaagtagaaaacaacatctaaatattctcagggaggttagtggaataataaagccttcaaggtaccatta |
39542926 |
T |
|
| Q |
500 |
caaatactattctattcattgatt |
523 |
Q |
| |
|
|||||| | ||||||||||||||| |
|
|
| T |
39542925 |
caaataatgttctattcattgatt |
39542902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 411 - 523
Target Start/End: Original strand, 39333459 - 39333571
Alignment:
| Q |
411 |
aactctcttcatgtacttccaagtagaaaacaacatctaaatattctcaaggatgttagtggaatattaaagccttcaaggtatcaatacaaatactatt |
510 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| |||| || |
|
|
| T |
39333459 |
aactctcttcttgtacttccaagtagaaaacaacatctaaatattctcaaggatgttagcggaataatcaagccttcaaggtatcaatacatttactgtt |
39333558 |
T |
|
| Q |
511 |
ctattcattgatt |
523 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39333559 |
ttattcattgatt |
39333571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 39358881 - 39358961
Alignment:
| Q |
1 |
aagacttgttagacttgctgaagaagacaatgaaaagtttttgctcaaactcaaggatcgaatcgacaggttaaaattcaa |
81 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||| || ||||| ||||||| |
|
|
| T |
39358881 |
aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggataggttcgaattcaa |
39358961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 270
Target Start/End: Complemental strand, 39578878 - 39578776
Alignment:
| Q |
168 |
tcagagtaggaattgatcttcctacaatagaggttcgattcgagggcttgaatatcgaagcagaagctcatgtaggaaataggtctttgcctaccttcac |
267 |
Q |
| |
|
||||||| |||||| ||||||||||||| || || ||||| ||| |||||||||||| ||||||| ||| |||||||| || ||||||||||| |||| |
|
|
| T |
39578878 |
tcagagttggaattaatcttcctacaatcgaagtccgatttgagcacttgaatatcgaggcagaagttcacgtaggaaaaagagctttgcctaccctcac |
39578779 |
T |
|
| Q |
268 |
taa |
270 |
Q |
| |
|
||| |
|
|
| T |
39578778 |
taa |
39578776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 39584701 - 39584608
Alignment:
| Q |
169 |
cagagtaggaattgatcttcctacaatagaggttcgattcgagggcttgaatatcgaagcagaagctcatgtaggaaataggtctttgcctacc |
262 |
Q |
| |
|
|||||| |||||| ||||||||||||| || || ||||| || |||||| ||||||||||||| ||| |||||||| || ||||||||||| |
|
|
| T |
39584701 |
cagagttggaattaatcttcctacaatcgaagtccgatttcagcacttgaagatcgaagcagaagttcacgtaggaaaaagagctttgcctacc |
39584608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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