View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1143_high_13 (Length: 226)
Name: NF1143_high_13
Description: NF1143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1143_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 40925078 - 40925177
Alignment:
| Q |
123 |
ttcacaaatatttacctgtgctggttgaaatctggggataatatagagatgaatgtgcaccttaatgaatcaatttacaaagggatgaatgttgtttatg |
222 |
Q |
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| T |
40925078 |
ttcacaaatatttacctgtgctggttgaaatctggggataatatagagatgaatgtgcaccttaatgaatcaatttacaaaggaatgaatgttgtttatg |
40925177 |
T |
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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 40924961 - 40925023
Alignment:
| Q |
1 |
tttatcaagtatcaacatcacatcctctgcagaacctctaatgatttcaattaagactgatat |
63 |
Q |
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| T |
40924961 |
tttatcaagtatcaacatcacatcctctgcagaacctgtaatgatttcaattaagactgatat |
40925023 |
T |
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