View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1143_high_4 (Length: 454)
Name: NF1143_high_4
Description: NF1143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1143_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 35350866 - 35350424
Alignment:
| Q |
1 |
tataactttttctgtttagattcacgcctgcaagttaaaaaatttttacttttagtccttgatggcatgcatagctcaataaaatcatgccacattgccc |
100 |
Q |
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| T |
35350866 |
tataactttttctgtttagattcacgcctgcaagttaaaaaattgttacttttagtccttgacagcatacatagctcaataaaatcatgccacattgccc |
35350767 |
T |
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| Q |
101 |
aatatgttgatgtcagggaagcaacaatttctgaatttgcagtgactgatcccaaacaaaaaacttatcgagactaaaaccnnnnnnntgttataattac |
200 |
Q |
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| T |
35350766 |
aatatgttgatgtcagggaagcaacaatctctgaatttgcagtgactgaacccaaacaaaaaacttatcgagactaaaaccaaaaaaatgttataattac |
35350667 |
T |
|
| Q |
201 |
aagaactaaattcatatttaagccttaacaaaattacattgatgaagttctgtaatacaactcagttggtagctgcaagtatgttgatacgcaggggcaa |
300 |
Q |
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| T |
35350666 |
aagaactaaattcatatttaagccttaacaaaattacattgatgatgttctgtaatacaactcagttggtagctgcaagtacgttgatacgcaggggcaa |
35350567 |
T |
|
| Q |
301 |
gggtttgaaa-ccagattatccatttttccacacttaaatgtgtgagtctcatcaccaggctaatttgtctgtgtgtgnnnnnnnncgtgattgtgttaa |
399 |
Q |
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| T |
35350566 |
gggtttgaaacccagattatccatttttgcacacttaaa--tgtgagtctcatcaccaggctaatttgtctatgtgtattttttttcatgattgtgttaa |
35350469 |
T |
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| Q |
400 |
tcacttaaataacacaacttaatccaattagtcttgtaatctctg |
444 |
Q |
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| T |
35350468 |
tcacttaaataacacaacttaatccaagtagtcttgtaatctctg |
35350424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 22159516 - 22159578
Alignment:
| Q |
119 |
aagcaacaatttctgaatttgcagtgactgatcccaaacaaaaaacttatcgagactaaaacc |
181 |
Q |
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| T |
22159516 |
aagcaacaatttttgaatttgcagggactgaaaccaaacaaataacttagagggactaaaacc |
22159578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 22218224 - 22218286
Alignment:
| Q |
119 |
aagcaacaatttctgaatttgcagtgactgatcccaaacaaaaaacttatcgagactaaaacc |
181 |
Q |
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|||||||||||| ||||||||||| |||||| ||||||||| |||||| | |||||||||| |
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| T |
22218224 |
aagcaacaatttttgaatttgcagggactgaaaccaaacaaataacttagagggactaaaacc |
22218286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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