View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1143_high_6 (Length: 433)
Name: NF1143_high_6
Description: NF1143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1143_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 32 - 322
Target Start/End: Original strand, 24698006 - 24698293
Alignment:
| Q |
32 |
tggatcaattttacgggctcttctcgacttatggacctcaaatctcggtttgtctttacctcggctattttattaatctttgtatatatcatgcaatgtc |
131 |
Q |
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| T |
24698006 |
tggatcaattttacgggctcttctcgacttatggacctcaaatctcggtttgtcttcacctcggctattttattaatctttgtatatatcatgcaatgtc |
24698105 |
T |
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| Q |
132 |
tataagtacttgaatgtgaatttgttttatttacagtgtgtatgcttacatgagaaagccagaaatctgtttacaactatcttgttagtattcttctaaa |
231 |
Q |
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| T |
24698106 |
tataagtacttgaatgtgaatttgttttatttacagtgtgtatgcttacatgagaaagccagaaatctgtttacaactatcttgttagtattcttctaaa |
24698205 |
T |
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| Q |
232 |
tctttcaaatgtaatagagttgattatgaaatttgttgttaatgagttttcggctttatgaatgaattataagacaagtaatgaaataaaa |
322 |
Q |
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| T |
24698206 |
tctttcaaatg---tagagttgattatgaaatttgttgttaatgagttttcggctttatgaatgaattgtaagacaagtaatgaaacaaaa |
24698293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 24698286 - 24698329
Alignment:
| Q |
380 |
aaacaaaaattagaagaaaattgaattatatgatgcaatctgtg |
423 |
Q |
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| T |
24698286 |
aaacaaaaactagaagaaaattgaattatatgatgcaatctgtg |
24698329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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