View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1143_low_1 (Length: 642)
Name: NF1143_low_1
Description: NF1143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1143_low_1 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 579; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 5 - 642
Target Start/End: Original strand, 40924412 - 40925047
Alignment:
| Q |
5 |
aagccctagctgttgctgctatgtgtgttgaagagcagtctagtatgcggccggttatagcagatgtggtcgcagctctagatttcattgcttcacataa |
104 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40924412 |
aagcccttgctgttgctgctatgtgtgttgaagagcagtctagtatgcggccggttatagcagatgtggtcgcagctctagatttcattgcttcacataa |
40924511 |
T |
|
| Q |
105 |
atatgatccacaagttcatccaatacaaagctcgagataaggttcatcttctccaaggagtgaaggtcatagacacgttacaagtaatgactatgagaca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
40924512 |
atatgatccacaagttcatccaatacaaagctcgagataaggttcatcttctccaaggagtgaaggtcatagacgcgttacaagtaatgactctgagaca |
40924611 |
T |
|
| Q |
205 |
gacagattgggagactagaaaaagtggaggagtgttttgagacacttactttacaggagataacaggttattcatctttttagttccatccacctctttg |
304 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40924612 |
gacagattgggagactagaaaaagtggagtagtgttttgagacacttactttacaggagataacaggttattcatctttttagttccatccacctctttg |
40924711 |
T |
|
| Q |
305 |
tacgtgtgagattactattccgcattaaagatgcttctcatttggattattgtttaggctcgagctaataatcttgaagttcattagccatcaattgata |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
40924712 |
tacgtgtgagattactattccgcattaaagatgcttctcatttggattattgtttaggctcaagctactaatcttgaagttcattagccatcaattgata |
40924811 |
T |
|
| Q |
405 |
tatagtctccatcataactatatgttattgtgaattgtcagggttgtcaaatagcggctatagtgcaacagaatttgaacaaattgctattgtgaaatag |
504 |
Q |
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| T |
40924812 |
tatagtctccatcataactatatgttattgtgaattgccagggttgtcaaatagcggctatagtgcaacagaatttgaacaaattgctattgtgaaatag |
40924911 |
T |
|
| Q |
505 |
ttgtttgcggcgttacagtgtaacaaagtctaaataactatttcaaatctttatcaagtatcaacatcacatcctctgcagaacctctaatgatttcaat |
604 |
Q |
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||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40924912 |
ttgtttgcggcattacagtataacaaagtctaaacaactatttcaaatctttatcaagtatcaacatcacatcctctgcagaacctgtaatgatttcaat |
40925011 |
T |
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| Q |
605 |
taagactgatatatggagaaaaggcagagaaagagaga |
642 |
Q |
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|||||||| |||||||||||||||||||| ||||||| |
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| T |
40925012 |
taagactg--atatggagaaaaggcagagagagagaga |
40925047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 40934294 - 40934533
Alignment:
| Q |
17 |
ttgctgctatgtgtgttgaagagcagtctagtatgcggccggttatagcagatgtggtcgcagctctagatttcattgcttcacataaatatgatccaca |
116 |
Q |
| |
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||||| |||||||||||| ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| || |||||||| |||| |
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| T |
40934294 |
ttgcttctatgtgtgttgtagagcagactaatatgcggccggttatagcagatgtggtctcagctctagatttccttgcttctcaaaaatatgaaccacg |
40934393 |
T |
|
| Q |
117 |
agttcatccaatacaaagctcgagataaggttcatcttctccaaggag------tgaaggtcatagacacgttacaagtaatgactatgagacagacaga |
210 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||||| |||| || | |||||||||||| |||||| ||||||| || |||| ||||| | |
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| T |
40934394 |
ggttcatccaatacaaaggtcgagatatggttcatcttcttcaagaagtagggctaaaggtcatagacgcgttactagtaatgtctcagagaaagacaaa |
40934493 |
T |
|
| Q |
211 |
ttgggagactagaaaaagtggaggagtgttttgagacacttac |
253 |
Q |
| |
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||||| | |||||||||| | ||||||||||||||||||| |
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| T |
40934494 |
ctgggaaattagaaaaagt---gtagtgttttgagacacttac |
40934533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 40908157 - 40908387
Alignment:
| Q |
17 |
ttgctgctatgtgtgttgaagagcagtctagtatgcggccggttatagcagatgtggtcgcagctctagatttcattgcttcacataaatatgatccaca |
116 |
Q |
| |
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||||||||||||||||| |||||||| ||| |||||| ||||||||||| ||||||||| |||||||| ||| | | |||||||| ||||||||||| || |
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| T |
40908157 |
ttgctgctatgtgtgttcaagagcagcctaatatgcgtccggttatagctgatgtggtcacagctctaaattacctagcttcacaaaaatatgatccgca |
40908256 |
T |
|
| Q |
117 |
agttcatccaatacaaagctcgagataaggttcatcttctcca------aggagtgaaggtcatagacacgttacaagtaatgactatgagacagacaga |
210 |
Q |
| |
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| |||||| |||||| |||||||| ||||||||||||||||| ||||||||| ||||||||| ||||| || || |||| ||||||||||||| |
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| T |
40908257 |
aattcatcatatacaaggctcgagaaaaggttcatcttctccaagaagtaggagtgaacgtcatagacgtgttactagcaaggactctgagacagacaga |
40908356 |
T |
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| Q |
211 |
ttgggagactagaaaaagtggaggagtgttt |
241 |
Q |
| |
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|| ||||| |||| |||||||| ||||||| |
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| T |
40908357 |
tttggagattagattaagtggagtagtgttt |
40908387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 40942494 - 40942590
Alignment:
| Q |
60 |
tatagcagatgtggtcgcagctctagatttcattgcttcacataaatatgatccacaagttcatccaatacaaagctcgagataaggttcatcttct |
156 |
Q |
| |
|
|||||| ||||||| | ||| |||| ||| ||||||| ||||| | || ||||||||||||||||| ||||||| |||| || ||||||| |||||| |
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| T |
40942494 |
tatagccgatgtggccacagttctaaattgcattgctacacatcagtacgatccacaagttcatccgatacaaaactcgtgaaaaggttcctcttct |
40942590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 40934592 - 40934642
Alignment:
| Q |
315 |
attactattccgcattaaagatgcttctcatttggattattgtttaggctc |
365 |
Q |
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||||||||| ||||||||||||||||||||| ||||| |||||| ||||| |
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| T |
40934592 |
attactattttgcattaaagatgcttctcattaggattcttgttttggctc |
40934642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 378 - 426
Target Start/End: Original strand, 40935065 - 40935112
Alignment:
| Q |
378 |
ttgaagttcattagccatcaattgatatatagtctccatcataactata |
426 |
Q |
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| T |
40935065 |
ttgaagtttattagccatcaatacatata-agtctccatcataactata |
40935112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 55064287 - 55064421
Alignment:
| Q |
27 |
gtgtgttgaagagcagtctagtatgcggccggttatagcagatgtggtcgcagctctagatttcattgcttcacataaatatgatccacaagttcatcca |
126 |
Q |
| |
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||||||| |||||||| ||| ||||||||| |||||||||||||||||| |||||||||||| ||||| ||| || || ||||||||||||||||||||| |
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| T |
55064287 |
gtgtgttcaagagcagcctaatatgcggcctgttatagcagatgtggtcacagctctagattacattgtttcccaaaattatgatccacaagttcatcca |
55064386 |
T |
|
| Q |
127 |
atacaaagctcgagataaggttcatcttctccaag |
161 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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| T |
55064387 |
atacaaagctcgagataattttcatcttctccaag |
55064421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 359
Target Start/End: Original strand, 55064562 - 55064646
Alignment:
| Q |
274 |
attcatctttttagttccatccacctctttgtacgtgtgagattactattccgcattaaagatgcttctcatttggattattgttt |
359 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||| ||||| |||||| |
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| T |
55064562 |
attcttctttttagttccatcttcctctttgtacacgtga-attactattttgcattaaagatgcttctcatcaggattcttgttt |
55064646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 495
Target Start/End: Original strand, 7253447 - 7253500
Alignment:
| Q |
442 |
tcagggttgtcaaatagcggctatagtgcaacagaatttgaacaaattgctatt |
495 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||||||||||||||||||| |
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| T |
7253447 |
tcagggttgtcaaatagtggctatagtgtagaggaatttgaacaaattgctatt |
7253500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 55064443 - 55064496
Alignment:
| Q |
200 |
agacagacagattgggagactagaaaaagtggaggagtgttttgagacacttac |
253 |
Q |
| |
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||||||||||||||||| ||||||||||| |||| || ||| ||||||| |||| |
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| T |
55064443 |
agacagacagattgggaaactagaaaaaggggagtagagttatgagacatttac |
55064496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 448 - 497
Target Start/End: Original strand, 18395722 - 18395771
Alignment:
| Q |
448 |
ttgtcaaatagcggctatagtgcaacagaatttgaacaaattgctattgt |
497 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18395722 |
ttgtcaaataacggctatagtgcaacagaatttgaacaaattgctattgt |
18395771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 447 - 497
Target Start/End: Original strand, 31731942 - 31731992
Alignment:
| Q |
447 |
gttgtcaaatagcggctatagtgcaacagaatttgaacaaattgctattgt |
497 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
31731942 |
gttgtcaaatagcggctatagtgtaatggaatttgaacaaattgctattgt |
31731992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 493
Target Start/End: Complemental strand, 24092438 - 24092392
Alignment:
| Q |
447 |
gttgtcaaatagcggctatagtgcaacagaatttgaacaaattgcta |
493 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| |||||| ||||| |
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| T |
24092438 |
gttgtcaaatagcggctatagtgaaacggaattttaacaaactgcta |
24092392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 6518239 - 6518192
Alignment:
| Q |
450 |
gtcaaatagcggctatagtgcaacagaatttgaacaaattgctattgt |
497 |
Q |
| |
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|||||||||||||||||||| | | ||||||||||||||||||||||| |
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| T |
6518239 |
gtcaaatagcggctatagtgtatctgaatttgaacaaattgctattgt |
6518192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 497
Target Start/End: Original strand, 6497161 - 6497211
Alignment:
| Q |
447 |
gttgtcaaatagcggctatagtgcaacagaatttgaacaaattgctattgt |
497 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||| |||||| |
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| T |
6497161 |
gttgtcaaatagcggctatagtgtaatggaatttgaacaaattggtattgt |
6497211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 497
Target Start/End: Complemental strand, 5576971 - 5576921
Alignment:
| Q |
447 |
gttgtcaaatagcggctatagtgcaacagaatttgaacaaattgctattgt |
497 |
Q |
| |
|
|||||||||| | |||||||||| | |||||||||||||| |||||||||| |
|
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| T |
5576971 |
gttgtcaaatggaggctatagtgtagcagaatttgaacaagttgctattgt |
5576921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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