View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1143_low_10 (Length: 347)
Name: NF1143_low_10
Description: NF1143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1143_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 65 - 281
Target Start/End: Original strand, 13134998 - 13135214
Alignment:
| Q |
65 |
cgatttgcacaattatatgattcattgacactacaacatacatgatacataggttatgcatcacaacattcgcaacaaccaaaatcgcgaaatttttaac |
164 |
Q |
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| T |
13134998 |
cgatttgcacaattatatgattcattgacactacaacacacatgatacataggttacgcatcacaacattcgcaacaatcaaaatcgcaaaatttttaac |
13135097 |
T |
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| Q |
165 |
gcgactatgcttgatatttaagactttgatataacctaattaattggtaatttttgtggtgacagaacgagaaattgagaatattggtgcaagagcaaag |
264 |
Q |
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| T |
13135098 |
gcgactatgcttgatatttaagactttgatataatctaattaattggtaatttttgtggtgacagagcgagaaattgagaatattggtgcaagagcaaag |
13135197 |
T |
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| Q |
265 |
aaggcaacaagtgggga |
281 |
Q |
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| T |
13135198 |
aaggcagcaagtgggga |
13135214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 276 - 343
Target Start/End: Original strand, 40925110 - 40925177
Alignment:
| Q |
276 |
tggggataatatagagatgaatgtgcaccttaatgaatcaatttacaaaggaatgaatgttgtttatg |
343 |
Q |
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| T |
40925110 |
tggggataatatagagatgaatgtgcaccttaatgaatcaatttacaaaggaatgaatgttgtttatg |
40925177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 55208692 - 55208738
Alignment:
| Q |
215 |
tttttgtggtgacagaacgagaaattgagaatattggtgcaagagca |
261 |
Q |
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| T |
55208692 |
tttttatggtgacagaacgagaaattgagactattgttgcaagagca |
55208738 |
T |
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