View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1143_low_12 (Length: 264)
Name: NF1143_low_12
Description: NF1143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1143_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 37987620 - 37987386
Alignment:
| Q |
1 |
aattcaatcgcagtctgtaaattttcataaacaactatcaaataatataagcataaatataaacactctaacactcacataataggaacatttacttgat |
100 |
Q |
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| T |
37987620 |
aattcaatcccagtctgtaaattttcataaacaactatcaaataatataagcataaatataaacactctaacactcacataataggaacatttacttgat |
37987521 |
T |
|
| Q |
101 |
atttacaaagctaatttatgaacattcagctactacatatattttcaaaaatcactactaaaacattagctatatatatgataatttaattaacctttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37987520 |
atttacaaagctaatttatgaacattcagctactacatatattttcaaaaatcactactaaaacattagctatatatatgataatttaattaacctttag |
37987421 |
T |
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| Q |
201 |
ttaggaccccagcaactcaagtacatcacagttct |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
37987420 |
ttaggaccccagcaactcaagtacatcacagttct |
37987386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 38022119 - 38022079
Alignment:
| Q |
195 |
ctttagttaggaccccagcaactcaagtacatcacagttct |
235 |
Q |
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|||||||| |||||||||||||||||| |||| |||||||| |
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| T |
38022119 |
ctttagttgggaccccagcaactcaagaacatgacagttct |
38022079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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