View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1143_low_13 (Length: 262)

Name: NF1143_low_13
Description: NF1143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1143_low_13
NF1143_low_13
[»] chr6 (59 HSPs)
chr6 (29-262)||(26861551-26861784)
chr6 (69-260)||(31284225-31284416)
chr6 (29-262)||(26823775-26824011)
chr6 (69-254)||(26622919-26623104)
chr6 (69-254)||(26728897-26729082)
chr6 (29-260)||(27677630-27677864)
chr6 (29-253)||(26646423-26646650)
chr6 (29-253)||(26752391-26752618)
chr6 (29-262)||(27698510-27698746)
chr6 (29-262)||(27718395-27718631)
chr6 (29-260)||(27678883-27679117)
chr6 (31-257)||(27706420-27706649)
chr6 (29-262)||(27604721-27604957)
chr6 (29-262)||(27611018-27611254)
chr6 (29-262)||(27724861-27725097)
chr6 (29-260)||(27593036-27593270)
chr6 (29-262)||(28781074-28781310)
chr6 (29-262)||(26802377-26802613)
chr6 (69-262)||(25579654-25579847)
chr6 (79-262)||(27531266-27531449)
chr6 (29-262)||(28786213-28786449)
chr6 (29-262)||(28792334-28792570)
chr6 (69-262)||(26142800-26142993)
chr6 (90-262)||(27229167-27229339)
chr6 (63-262)||(26655924-26656123)
chr6 (63-262)||(26761895-26762094)
chr6 (69-262)||(25481677-25481870)
chr6 (69-262)||(27338124-27338317)
chr6 (69-262)||(27398864-27399057)
chr6 (69-262)||(25538475-25538668)
chr6 (69-262)||(26055861-26056054)
chr6 (69-262)||(26075831-26076024)
chr6 (31-254)||(26884106-26884334)
chr6 (69-232)||(28234529-28234692)
chr6 (69-262)||(26048780-26048973)
chr6 (69-262)||(26069949-26070142)
chr6 (69-158)||(28139580-28139669)
chr6 (69-158)||(28242843-28242932)
chr6 (67-158)||(28185405-28185496)
chr6 (63-230)||(28226917-28227084)
chr6 (69-158)||(28181153-28181242)
chr6 (76-158)||(28325520-28325602)
chr6 (76-221)||(28149914-28150058)
chr6 (63-219)||(26341987-26342143)
chr6 (79-253)||(25506978-25507146)
chr6 (69-156)||(28297772-28297859)
chr6 (69-156)||(28514214-28514301)
chr6 (29-156)||(26848701-26848831)
chr6 (176-262)||(29825962-29826048)
chr6 (69-158)||(2184327-2184416)
chr6 (69-158)||(28098428-28098517)
chr6 (67-227)||(26893528-26893688)
chr6 (76-131)||(26937160-26937215)
chr6 (64-115)||(26975134-26975185)
chr6 (69-115)||(2184980-2185026)
chr6 (165-227)||(29467797-29467859)
chr6 (63-116)||(27665170-27665223)
chr6 (29-116)||(27214498-27214588)
chr6 (29-116)||(27234640-27234730)
[»] chr1 (3 HSPs)
chr1 (69-253)||(268403-268587)
chr1 (29-233)||(28164365-28164572)
chr1 (29-158)||(28127682-28127814)
[»] chr4 (5 HSPs)
chr4 (29-253)||(18679570-18679797)
chr4 (70-253)||(18724132-18724315)
chr4 (70-262)||(18731551-18731743)
chr4 (29-262)||(18699403-18699639)
chr4 (29-253)||(18655480-18655707)
[»] chr8 (2 HSPs)
chr8 (69-253)||(29273829-29274013)
chr8 (78-254)||(31903794-31903970)
[»] scaffold0349 (2 HSPs)
scaffold0349 (31-262)||(3439-3674)
scaffold0349 (29-262)||(14372-14607)
[»] scaffold0277 (2 HSPs)
scaffold0277 (29-262)||(4687-4923)
scaffold0277 (29-262)||(13648-13884)
[»] scaffold0419 (1 HSPs)
scaffold0419 (29-262)||(7460-7696)
[»] scaffold1254 (1 HSPs)
scaffold1254 (103-262)||(10-169)
[»] scaffold0038 (4 HSPs)
scaffold0038 (69-232)||(34690-34853)
scaffold0038 (69-158)||(43005-43094)
scaffold0038 (63-230)||(27415-27582)
scaffold0038 (76-158)||(116835-116917)
[»] scaffold0019 (1 HSPs)
scaffold0019 (69-254)||(58341-58526)
[»] chr2 (2 HSPs)
chr2 (63-219)||(3279666-3279822)
chr2 (176-260)||(17993850-17993934)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 59)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 26861784 - 26861551
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttgcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacac 128  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26861784 agaaaacaggcaaaacgacgcgacccttttccttgcagttaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttggcagaaaacac 26861685  T
Q  129 aggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattccc 228  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26861684 aggaatgaaaattctagactcttcaatggcattgtcgagtgatcttttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattccc 26861585  T
Q  229 ttgtcagtaagagccttgtagagattgccggtaa 262  Q
    |||||||||||||||||||||||||| |||||||    
T  26861584 ttgtcagtaagagccttgtagagattaccggtaa 26861551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 69 - 260
Target Start/End: Complemental strand, 31284416 - 31284225
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||||||| || || ||||||||||||||||||||||||| |||||||    
T  31284416 aatgatgtggacaagttcgtccaaacaaaacgacgaagaggcatagttggcagaaaacacggggataaaaatcctagactcttcaatggcattgtcgagt 31284317  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggt 260  Q
    ||| || ||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31284316 gatggtgtgatttcatcccctctttgaagttcactatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagattgccggt 31284225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 26824011 - 26823775
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttgcaatt---aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||||| ||| |||||||||||| |      |||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  26824011 agaaaacaggcaaaacgaggcgccccttttccttgtagacgcgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttggcagaaaa 26823912  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| |||||||||||||||||||||||||  | ||||||| ||| ||||| ||||||||||||||||||||||||||| |  |||||||| |||    
T  26823911 cacaggaataaaaatcctagactcttcaatggcattattgagtgattgttcgattttatcccctctttgaagttcacgatcatcaaaaaaggtgtggatt 26823812  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    |||||||| ||||||||||||||||||||||||||||    
T  26823811 cccttgtctgtaagagccttgtagagattgccggtaa 26823775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 69 - 254
Target Start/End: Complemental strand, 26623104 - 26622919
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| |||||||||||||||||||||||||| ||| | |||||||||  ||||||||||||||| ||||||||||||||||| || |||| ||| |||    
T  26623104 aatgatgtggacaagttcatccaaacaaaatgaagaatatgcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcattgtcaagt 26623005  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagatt 254  Q
    ||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  26623004 gatggtttgatttcgtcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatt 26622919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 69 - 254
Target Start/End: Complemental strand, 26729082 - 26728897
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| |||||||||||||||||||||||||| ||| | |||||||||  ||||||||||||||| ||||||||||||||||| || |||| ||| |||    
T  26729082 aatgatgtggacaagttcatccaaacaaaatgaagaatatgcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcattgtcaagt 26728983  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagatt 254  Q
    ||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  26728982 gatggtttgatttcgtcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatt 26728897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 27677630 - 27677864
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||| ||||| ||||||||||  ||||   || | |||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  27677630 agaaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaa 27677729  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||| ||| ||||||||||||||||||||||| | |   |||||| || |||||||||||||||||||||||||| |||  || ||||||||||| |||    
T  27677730 cacagcaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccctctttgaagttcatgattgtcaatgaaggtgtggatt 27677829  T
Q  226 cccttgtcagtaagagccttgtagagattgccggt 260  Q
    |||||||||  ||||||||||||||||||||||||    
T  27677830 cccttgtcatcaagagccttgtagagattgccggt 27677864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 253
Target Start/End: Complemental strand, 26646650 - 26646423
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    ||||||| ||||||||||  |||||||||  ||||   |||| |||||| ||||||||||| ||||||||||||   |||||||||||||||| ||||||    
T  26646650 agaaaacgggcaaaacgagacgaccctttgtcttgtagcaatgaatgatgtggacaagttcgtccaaacaaaatttagaagaggcatagttgatagaaaa 26646551  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||| ||||||||||| | |  ||||||| || |||||||||| ||||| | ||| |||| |||||| |||||||||||||||    
T  26646550 cacaggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatcacaatcatcaatgaaggtgtgaatt 26646451  T
Q  226 cccttgtcagtaagagccttgtagagat 253  Q
    ||||||||||||||||||||||||||||    
T  26646450 cccttgtcagtaagagccttgtagagat 26646423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 253
Target Start/End: Complemental strand, 26752618 - 26752391
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    ||||||| ||||||||||  |||||||||  ||||   |||| |||||| ||||||||||| ||||||||||||   |||||||||||||||| ||||||    
T  26752618 agaaaacgggcaaaacgagacgaccctttgtcttgtagcaatgaatgatgtggacaagttcgtccaaacaaaatttagaagaggcatagttgatagaaaa 26752519  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||| ||||||||||| | |  ||||||| || |||||||||| ||||| | ||| |||| |||||| |||||||||||||||    
T  26752518 cacaggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatcacaatcatcaatgaaggtgtgaatt 26752419  T
Q  226 cccttgtcagtaagagccttgtagagat 253  Q
    ||||||||||||||||||||||||||||    
T  26752418 cccttgtcagtaagagccttgtagagat 26752391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 262
Target Start/End: Original strand, 27698510 - 27698746
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttt---tccttgcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||||| ||||||||||   || | ||| | ||| || ||||||||||| |||||||||||||| ||||| |||||||||| ||||||    
T  27698510 agaaaacaggcaaaacgaggcgaccctttgtctcgtagcagtgaattatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttgagagaaaa 27698609  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||| || |||||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| || |||    
T  27698610 cacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggatt 27698709  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27698710 cccttgtcagtaagagccttgtagagatttccggtaa 27698746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 262
Target Start/End: Original strand, 27718395 - 27718631
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||||| ||||||||||  ||||   || | ||| || ||||||||||| ||||||||||| || |||||||||||||||| ||||||    
T  27718395 agaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagttgatagaaaa 27718494  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||| || |||||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| || |||    
T  27718495 cacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggatt 27718594  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27718595 cccttgtcagtaagagccttgtagagatttccggtaa 27718631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 27679117 - 27678883
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||| ||||| ||||||||||  ||||   || | |||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  27679117 agaaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaa 27679018  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||||||||||||||| | |   |||||| || |||||||||| |||||||||||  ||   | ||| ||||||||||  |||    
T  27679017 cacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatctcctctttgaagaccattcttatcaatgaaggtgttgatt 27678918  T
Q  226 cccttgtcagtaagagccttgtagagattgccggt 260  Q
    ||||||||||||||||||||||||||||| |||||    
T  27678917 cccttgtcagtaagagccttgtagagattcccggt 27678883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 31 - 257
Target Start/End: Original strand, 27706420 - 27706649
Alignment:
Q  31 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 127  Q
    |||||||||| ||||| ||||||||||  ||||   || | |||||| ||||||||||| |||||||||||||| |||||||||||| ||| ||||||||    
T  27706420 aaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcataggtgatagaaaaca 27706519  T
Q  128 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 227  Q
    ||||||| ||||||||||||||||||||||| | |   |||||| || |||||||||||| ||||||||||||| |||  || ||||||||||| |||||    
T  27706520 caggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccttctttgaagttcatgattgtcaatgaaggtgtggattcc 27706619  T
Q  228 cttgtcagtaagagccttgtagagattgcc 257  Q
    |||||||  || ||||||||||||||||||    
T  27706620 cttgtcatcaaaagccttgtagagattgcc 27706649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 262
Target Start/End: Original strand, 27604721 - 27604957
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||||||||||||||||  | ||   |||| |||||| || |||||||||||||||||||| || ||||||||||| |||| ||||||    
T  27604721 agaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaaggaagaagaggcatatttgatagaaaa 27604820  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| |||||||| || || |||||||| | |   |||| | || |||||||||| |||||| |||| |||   ||||| |||||||| ||||||    
T  27604821 cacaggaataaaaatcctggattcatcaatggccttgagaagtgctggtgtgatttcatctcctcttcgaagatcattttcatcaatgaaggtatgaatt 27604920  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    |||||||||||||||||||||||||||||||||||||    
T  27604921 cccttgtcagtaagagccttgtagagattgccggtaa 27604957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 262
Target Start/End: Original strand, 27611018 - 27611254
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||||| ||||||||||  ||||   || | ||| || ||||||||||| ||||||||||| || |||||||||||||||| ||||||    
T  27611018 agaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagttgatagaaaa 27611117  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||| || |||||||| | |  ||||||| || |||||||||| |||||| |||| |||   ||||| |||||||| || |||    
T  27611118 cacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctcttggaagatcattgtcatcaatgaaggtatggatt 27611217  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27611218 cccttgtcagtaagagccttgtagagatttccggtaa 27611254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 262
Target Start/End: Original strand, 27724861 - 27725097
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||||| ||||||||||  ||||   || | ||| || ||||||||||| ||||||||||| || ||| |||||||||||| ||||||    
T  27724861 agaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaataggcatagttgatagaaaa 27724960  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||| || |||||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| || |||    
T  27724961 cacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggatt 27725060  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27725061 cccttgtcagtaagagccttgtagagatttccggtaa 27725097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 27593036 - 27593270
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    ||||||||||||||||   ||||||||||  ||||   |||| |||||| ||| ||||||| ||||||||||| || |||||||||||||||| ||||||    
T  27593036 agaaaacaggcaaaacagggcgaccctttgtcttgtagcaatgaatgatgtggtcaagttcgtccaaacaaaacgaagaagaggcatagttgatagaaaa 27593135  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||||||||||||||| | |   |||||| || |||||||||  |||||||||||  ||   ||||| ||||||||||  |||    
T  27593136 cacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatttcctctttgaagaccattgtcatcaatgaaggtgttgatt 27593235  T
Q  226 cccttgtcagtaagagccttgtagagattgccggt 260  Q
    |||||||||||||||||||||||||||||||||||    
T  27593236 cccttgtcagtaagagccttgtagagattgccggt 27593270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 28781310 - 28781074
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||||| |||||| |||  ||||   |||| ||| || || |||||||| ||||| ||||||   |||| ||||||||||| ||||||    
T  28781310 agaaaacaggcaaaacgaggcgaccttttgtcttgtagcaatgaataatgtgaacaagttcgtccaagcaaaattttgaagtggcatagttgatagaaaa 28781211  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||| ||||| ||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| |  |||    
T  28781210 cacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgatt 28781111  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    |||||||||||||||||||||||||||||||||||||    
T  28781110 cccttgtcagtaagagccttgtagagattgccggtaa 28781074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 26802613 - 26802377
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttcctt---gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||| |||||| |||| ||||||||||  |||   ||||| ||| || || |||||||| ||||| ||||||   |||||||||||||||| ||||||    
T  26802613 agaaaataggcaagacgaggcgaccctttgtcttatagcaatgaataatgtgaacaagttcgtccaagcaaaattttgaagaggcatagttgatagaaaa 26802514  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||| ||||| ||||||||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| || |||    
T  26802513 cacaggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggatt 26802414  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  26802413 cccttgtcaataagagccttgtagagattgcccgtaa 26802377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 25579847 - 25579654
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||||||||| ||||||||||| | | | |||    
T  25579847 aatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagt 25579748  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||| || |||||||||| ||||||||||| |||  |||||| | ||||||  ||||||||||||||  ||||||||| |||||||| |||||||    
T  25579747 gatggtgtgatttcatctcctctttgaagatcattatcatcaaagaaggtacgaattcccttgtcaacaagagccttatagagattaccggtaa 25579654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 262
Target Start/End: Original strand, 27531266 - 27531449
Alignment:
Q  79 acaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttga 178  Q
    |||||||| |||||||||||||| ||||| ||||||||  ||||||| || ||||| ||||||||||| | |||||||||||  |  |||||| || |||    
T  27531266 acaagttcgtccaaacaaaatgaagaagatgcatagttttcagaaaatacgggaataaaaatcctagatttttcaatggcattttttagtgatggtgtga 27531365  T
Q  179 tttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||||||| ||||||||||| |||   ||||| |||||||| |  |||||||||||||||||||||||||||||||| |||||||    
T  27531366 tttcatctcctctttgaagatcattgtcatcaatgaaggtatagattcccttgtcagtaagagccttgtagagatttccggtaa 27531449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 28786449 - 28786213
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||||| |||||| |||  ||||   |||| ||| || || |||||||| ||||| ||||||   || | ||| ||||||| ||||||    
T  28786449 agaaaacaggcaaaacgaggcgaccttttgtcttgtagcaatgaataatgtgaacaagttcgtccaagcaaaattttgatgtggcgtagttgatagaaaa 28786350  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||| ||||| ||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| |  |||    
T  28786349 cacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgatt 28786250  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||||||||||||||||||||||||||||| |||||||    
T  28786249 cccttgtcagtaagagccttgtagagatttccggtaa 28786213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 28792570 - 28792334
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||||| |||||| |||  ||||   |||| ||| || || |||||||| ||||| ||||||   || | ||| ||||||| ||||||    
T  28792570 agaaaacaggcaaaacgaggcgaccttttgtcttgtagcaatgaataatgtgaacaagttcgtccaagcaaaattttgatgtggcgtagttgatagaaaa 28792471  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||| ||||| ||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| |  |||    
T  28792470 cacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgatt 28792371  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||||||||||||||||||||||||||||| |||||||    
T  28792370 cccttgtcagtaagagccttgtagagatttccggtaa 28792334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 26142993 - 26142800
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||||||||| ||||||||||| | | | |||    
T  26142993 aatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagt 26142894  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||| || |||||||||| ||||||| ||| |||  |||||| ||||| ||  ||||||||||||||  ||||||||| |||||||| |||||||    
T  26142893 gatggtgtgatttcatctcctctttcaagatcattatcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggtaa 26142800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 90 - 262
Target Start/End: Complemental strand, 27229339 - 27229167
Alignment:
Q  90 caaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccct 189  Q
    |||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||||| ||| || |||||||| | | |||||||| || ||||||| || |||    
T  27229339 caaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatccgagattcgtcaatggccttgacgagtgatggtgtgatttcgtctcct 27229240  T
Q  190 ctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    |||||||| |||   ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  27229239 ctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccggtaa 27229167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 262
Target Start/End: Complemental strand, 26656123 - 26655924
Alignment:
Q  63 gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcg 162  Q
    ||||| |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| |||||||| || ||||||||||| |      
T  26656123 gcaatgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggcctta 26656024  T
Q  163 tcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
     |||||||| || |||||||||| |||||  |||| |||   ||||| ||||| || || |||||||| ||| |||||||||||||||||||||||||||    
T  26656023 acgagtgatggtgtgatttcatctcctctgagaagatcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaa 26655924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 262
Target Start/End: Complemental strand, 26762094 - 26761895
Alignment:
Q  63 gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcg 162  Q
    ||||| |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| |||||||| || ||||||||||| |      
T  26762094 gcaatgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggcctta 26761995  T
Q  163 tcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
     |||||||| || |||||||||| |||||  |||| |||   ||||| ||||| || || |||||||| ||| |||||||||||||||||||||||||||    
T  26761994 acgagtgatggtgtgatttcatctcctctgagaagatcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaa 26761895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 25481870 - 25481677
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  |||||  |||||||||| ||||||||||| | | | |||    
T  25481870 aatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaatacaaatcctagattcttcaatggccttgacaagt 25481771  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||| || |||||||||| ||||||||||| |||   ||||| ||||| ||  ||||||||||||||  ||||||||| |||||||| |||||||    
T  25481770 gatggtgtgatttcatctcctctttgaagatcattttcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggtaa 25481677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 69 - 262
Target Start/End: Original strand, 27338124 - 27338317
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||||||  ||||||| |  ||||| ||||||||||||||||||||||| | | | |||    
T  27338124 aatgatgtggacaagttcgtccaagcaaaatgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgacaagt 27338223  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||| || || ||||||| ||||||| ||| ||    ||||| |||||||| |  |||||||||||| |||||||||||||||||||||||||||    
T  27338224 gatggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaa 27338317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 69 - 262
Target Start/End: Original strand, 27398864 - 27399057
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||||||  ||||||| |  ||||| ||||||||||||||||||||||| | | | |||    
T  27398864 aatgatgtggacaagttcgtccaagcaaaatgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgacaagt 27398963  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||| || || ||||||| ||||||| ||| ||    ||||| |||||||| |  |||||||||||| |||||||||||||||||||||||||||    
T  27398964 gatggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaa 27399057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 25538668 - 25538475
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||| ||||| ||||| ||||| | | | |||    
T  25538668 aatgatctggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaattctagattcttcgatggccttgacaagt 25538569  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||| || |||||||||| ||||||| ||| |||  |||||| ||||| ||   |||||||||||||  ||||||||| |||||||| |||||||    
T  25538568 gatggtgtgatttcatctcctctttcaagatcattatcatctatgaaagtactaattcccttgtcaacaagagccttatagagattaccggtaa 25538475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 26056054 - 26055861
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||||| ||| ||||| ||||| | | | |||    
T  26056054 aatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagt 26055955  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    |||  | |||||||||| ||||||||||| |||   ||||| ||||| || | |||||||||||||  ||||||||| |||||||| |||||||    
T  26055954 gatgatgtgatttcatctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaa 26055861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 26076024 - 26075831
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||||| ||| ||||| ||||| | | | |||    
T  26076024 aatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagt 26075925  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    |||  | |||||||||| ||||||||||| |||   ||||| ||||| || | |||||||||||||  ||||||||| |||||||| |||||||    
T  26075924 gatgatgtgatttcatctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaa 26075831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 31 - 254
Target Start/End: Complemental strand, 26884334 - 26884106
Alignment:
Q  31 aaaacaggcaaaacgacgcgacccttt---tccttgcaattaatga--tttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||| ||||||||||   || | ||| | |||||  | ||||||||||| |||||||||||||| ||||| |||||||||  ||||||    
T  26884334 aaaacaggcaaaacgaggcgaccctttgtctcgtagcagtgaatgacatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggtagaaaa 26884235  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
     |  ||||| ||||| ||||| ||||||||||| | |  ||||||| || |||||||    |||||| |||| | |  |||||| ||||||||||| |||    
T  26884234 tattggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcgcttcctcttggaagatgattatcatcaatgaaggtgtggatt 26884135  T
Q  226 cccttgtcagtaagagccttgtagagatt 254  Q
    ||||||| |||||||||||||||||||||    
T  26884134 cccttgttagtaagagccttgtagagatt 26884106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 69 - 232
Target Start/End: Complemental strand, 28234692 - 28234529
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || |||||||||||||||||||||||||||||||| | |   |||    
T  28234692 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagt 28234593  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgt 232  Q
    ||| || | |||||||| |||| |||||| || |  ||||| ||||||||||| ||||||||||    
T  28234592 gatggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgt 28234529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 26048973 - 26048780
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||||||||| ||||| ||||| | | | |||    
T  26048973 aatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggccttgacaagt 26048874  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
        || |||||||||| ||||||| ||| |||  |||||| ||||| ||   ||||||||||||| | |||||||| |||||||| |||||||    
T  26048873 ttgggtgtgatttcatctcctctttcaagatcattatcatcaatgaaagtacaaattcccttgtcaatgagagccttatagagattaccggtaa 26048780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 26070142 - 26069949
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||||||||| ||||| ||||| | | | |||    
T  26070142 aatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggccttgacaagt 26070043  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
        || |||||||||| ||||||| ||| |||  |||||| ||||| ||   ||||||||||||| | |||||||| |||||||| |||||||    
T  26070042 ttgggtgtgatttcatctcctctttcaagatcattatcatcaatgaaagtacaaattcccttgtcaatgagagccttatagagattaccggtaa 26069949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 28139669 - 28139580
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 158  Q
    |||||| ||||||||||| ||||| ||||| || ||||||||||||||||  ||||||||||| |||||||||||||| |||||||||||    
T  28139669 aatgatgtggacaagttcgtccaagcaaaacgaagaagaggcatagttgatggaaaacacagggatgaaaatcctagattcttcaatggc 28139580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 28242932 - 28242843
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 158  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || ||||||||||||||||||||||||||||||||    
T  28242932 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggc 28242843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 28185496 - 28185405
Alignment:
Q  67 ttaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 158  Q
    |||||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || || |||||||||||||||||||||||||||||    
T  28185496 ttaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggc 28185405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 28227084 - 28226917
Alignment:
Q  63 gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcg 162  Q
    ||||| |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || |||||||||||||||||||| ||||||||| | | |    
T  28227084 gcaatgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttg 28226985  T
Q  163 tcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattccctt 230  Q
       ||||||  | | |||||||| |||| |||||| || | |||||| | ||| ||||||||||||||    
T  28226984 aaaagtgatgatgttatttcatcacctccttgaagctctctatcatcaaagaatgtgtgaattccctt 28226917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 28181242 - 28181153
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 158  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || || |||||||||||||||||||||||||||||    
T  28181242 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggc 28181153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 28325602 - 28325520
Alignment:
Q  76 tggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 158  Q
    ||||||||||||||||| ||||| || ||||| ||||| |||| ||| || | ||||||||||||||||||||||||||||||    
T  28325602 tggacaagttcatccaagcaaaaggaagaagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggc 28325520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 28150058 - 28149914
Alignment:
Q  76 tggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtt 175  Q
    ||||||||||| |||||||||||||| ||||| | |||||||| ||| || |  |||||||||||||| |||||||||||||| | |  ||||||| ||     
T  28150058 tggacaagttcgtccaaacaaaatgaagaagaagtatagttgatagagaagattggaatgaaaatcctggactcttcaatggccttg-agagtgatggtg 28149960  T
Q  176 tgatttcatcccctctttgaagttcacgatcatccatgaaggtgtg 221  Q
    ||||||| ||||||| || ||| ||   |||||| |||||||||||    
T  28149959 tgatttcgtcccctcgttaaagctccgtatcatcaatgaaggtgtg 28149914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 219
Target Start/End: Original strand, 26341987 - 26342143
Alignment:
Q  63 gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcg 162  Q
    ||||| |||||| ||||||||||| ||||||||||| || ||||| ||||||||||  || || |  |||||||||||||| |||||||||||||| | |    
T  26341987 gcaatgaatgatgtggacaagttcgtccaaacaaaacgaagaagaagcatagttgattgagaaaattggaatgaaaatcctggactcttcaatggctttg 26342086  T
Q  163 tcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtg 219  Q
     | |||||| || ||||||  || ||||  ||||| || | |||||| |||||||||    
T  26342087 acaagtgattgtgtgattttgtcacctccatgaagctccctatcatcaatgaaggtg 26342143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 25506978 - 25507146
Alignment:
Q  79 acaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttga 178  Q
    |||||||| ||||||||||||   |||||||||||||||| |||||  || ||||| ||||||||||| |||||||||||   | ||| |||| || |||    
T  25506978 acaagttcctccaaacaaaattttgaagaggcatagttgatagaaagaaccggaataaaaatcctagattcttcaatggcgatgacgactgatggtgtga 25507077  T
Q  179 tttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagat 253  Q
    ||||||| |||||||  || |||| |||||| |      |||||||||||||||||   |||||| |||||||||    
T  25507078 tttcatctcctcttttcagatcacaatcatcaa------tgtgaattcccttgtcatatagagccgtgtagagat 25507146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 28297772 - 28297859
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatg 156  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||  ||| || ||||||||||||||||||| ||||||||||    
T  28297772 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattggtagataagacaggaatgaaaatcctagtctcttcaatg 28297859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 28514301 - 28514214
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatg 156  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||  ||| || ||||||||||||||||||| ||||||||||    
T  28514301 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattggtagataagacaggaatgaaaatcctagtctcttcaatg 28514214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 26848831 - 26848701
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||| | ||| | || |||||||||||||   |||| |||||| ||||||||||| ||||||||||| || |||| |||||||||  |||| ||    
T  26848831 agaaaacaggaataaccatgctacccttttccttggagcaatgaatgatgtggacaagttcgtccaaacaaaacgaagaagtggcatagttctcagagaa 26848732  T
Q  126 cacaggaatgaaaatcctagactcttcaatg 156  Q
     ||| ||||| ||||||| || |||||||||    
T  26848731 tacaagaatggaaatcctcgagtcttcaatg 26848701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 29826048 - 29825962
Alignment:
Q  176 tgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||||||| |||||||||||||| ||    ||||| ||||||||| |||||  ||||||||| ||||| |||||||||||||||||||    
T  29826048 tgatttcgtcccctctttgaagctctttgtcatcaatgaaggtgcgaattttcttgtcagttagagctttgtagagattgccggtaa 29825962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 2184416 - 2184327
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 158  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||    || || ||||| |||||||| || ||||||||||||||    
T  2184416 aatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagttctttgagaaaacagggatgaaaattctggactcttcaatggc 2184327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 28098428 - 28098517
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 158  Q
    |||||| |||||||||||||||||||||||  | ||||| ||||||||   ||| || || ||||| |||||||| |||||||| |||||    
T  28098428 aatgatgtggacaagttcatccaaacaaaacaaagaagaagcatagttcttagagaagaccggaattaaaatcctggactcttcgatggc 28098517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 26893528 - 26893688
Alignment:
Q  67 ttaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcga 166  Q
    |||||||||| ||| ||||| ||||||||||||   ||||| |||||||||| ||| |  || |||||| | ||| ||||||||||||| || | |   |    
T  26893528 ttaatgattttgacgagttcttccaaacaaaatatagaagaagcatagttgatagagaggactggaatgtatatcatagactcttcaattgccttgataa 26893627  T
Q  167 gtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 227  Q
    ||||| ||  |||||| || ||||| ||||| ||   |||||| |||||||||||||||||    
T  26893628 gtgatggtgagatttcgtcacctctatgaagctctgtatcatcaatgaaggtgtgaattcc 26893688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 26937215 - 26937160
Alignment:
Q  76 tggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacagg 131  Q
    ||||||||||| |||||||||||||| |||| ||||||||||| ||| || |||||    
T  26937215 tggacaagttcgtccaaacaaaatgaagaagtggcatagttgatagagaatacagg 26937160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 26975185 - 26975134
Alignment:
Q  64 caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagt 115  Q
    |||| |||||| ||||||||||| |||||||||||||| ||||| |||||||    
T  26975185 caatgaatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagt 26975134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 2185026 - 2184980
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagt 115  Q
    |||||| ||||||||||| |||||||||||||| ||||| |||||||    
T  2185026 aatgatatggacaagttcgtccaaacaaaatgaagaagaagcatagt 2184980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 29467859 - 29467797
Alignment:
Q  165 gagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 227  Q
    ||||||| || ||||||| || ||| ||||||||||   ||||||||||||||||||||||||    
T  29467859 gagtgatggtgtgatttcttcgcctttttgaagttcttcatcatccatgaaggtgtgaattcc 29467797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 27665170 - 27665223
Alignment:
Q  63 gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagtt 116  Q
    ||||| |||||| |||||||||||||| ||||||||||| ||||  ||||||||    
T  27665170 gcaatgaatgatgtggacaagttcatctaaacaaaatgaagaagtagcatagtt 27665223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 27214588 - 27214498
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagtt 116  Q
    |||||||||| | ||| | |||||| |||||||||   |||| | |||| ||||||||||| |||||||||||||| ||||  ||||||||    
T  27214588 agaaaacaggtagaacaaggcgacctttttccttggagcaatgagtgatgtggacaagttcgtccaaacaaaatgaagaagtagcatagtt 27214498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 27234640 - 27234730
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagtt 116  Q
    |||||||||| | ||| | |||||| |||||||||   |||| | |||| ||||||||||| |||||||||||||| ||||  ||||||||    
T  27234640 agaaaacaggtagaacaaggcgacctttttccttggagcaatgagtgatgtggacaagttcgtccaaacaaaatgaagaagtagcatagtt 27234730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 9e-79; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 69 - 253
Target Start/End: Original strand, 268403 - 268587
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  268403 aatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggcattgtcgagt 268502  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagat 253  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  268503 gatggtttgatttcatcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagat 268587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 28164365 - 28164572
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||| | ||||||||||  ||||   || | |||||| ||||||||||| |||||||||||||| |||||||||||||||| ||| ||    
T  28164365 agaaaacaggcaaaactaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagataa 28164464  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||| | ||| | ||||||||| | |  || |||  || ||||||| || ||||| | ||| |||| |||||| ||||| |||||||||    
T  28164465 cacaggaataaaaattcaagatttttcaatggccttgatgaatgacggtgtgatttcttctcctctctcaagatcacaatcatcaatgaatgtgtgaatt 28164564  T
Q  226 cccttgtc 233  Q
    ||||||||    
T  28164565 cccttgtc 28164572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 28127682 - 28127814
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||| | ||||||||||  ||||   || | |||||| || |||||||| |||||||||||||| |||||||||||||||  ||||||    
T  28127682 agaaaacaggcaaaactaggcgaccctttgtcttgtagcagtgaatgatgtgcacaagttcgtccaaacaaaatgaagaagaggcatagttggtagaaaa 28127781  T
Q  126 cacaggaatgaaaatcctagactcttcaatggc 158  Q
     |||||||| ||||| ||||| |||||||||||    
T  28127782 tacaggaataaaaattctagattcttcaatggc 28127814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 29 - 253
Target Start/End: Original strand, 18679570 - 18679797
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||| |  |||||||||  ||||   || | |||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  18679570 agaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaa 18679669  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||| || ||||| ||||| ||||||||||| |||    
T  18679670 cacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcaggtcacggtcatcaatgaaggtgtggatt 18679769  T
Q  226 cccttgtcagtaagagccttgtagagat 253  Q
    || |||||||||||||||||||||||||    
T  18679770 cctttgtcagtaagagccttgtagagat 18679797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 70 - 253
Target Start/End: Original strand, 18724132 - 18724315
Alignment:
Q  70 atgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtg 169  Q
    ||||| ||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  18724132 atgatgtggacaagttcgttcaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtg 18724231  T
Q  170 atcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagat 253  Q
    || |||||||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  18724232 atggtttgatttcatcccctctttgcaggtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagat 18724315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 70 - 262
Target Start/End: Original strand, 18731551 - 18731743
Alignment:
Q  70 atgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtg 169  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  18731551 atgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtg 18731650  T
Q  170 atcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    || |||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||  ||||||||| ||| ||||    
T  18731651 atggtttgatttcatcccctctttgcaggtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagctctgtagagatggccagtaa 18731743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 29 - 262
Target Start/End: Original strand, 18699403 - 18699639
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    ||||||||||||||||||  ||||| |||  ||||   || | |||||| || |||||||| |||||||||||||| |||||||||||||||| ||||||    
T  18699403 agaaaacaggcaaaacgagacgaccttttgtcttgtagcagtgaatgatgtgaacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaa 18699502  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| || ||||| ||||| ||||||||||| |||    
T  18699503 cacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatccccactttgcaggtcacggtcatcaatgaaggtgtggatt 18699602  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||||||||||||||||| |||||||||| ||| ||||    
T  18699603 cccttgtcagtaagagctttgtagagatggccagtaa 18699639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 29 - 253
Target Start/End: Original strand, 18655480 - 18655707
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||| |||||||  |||||||||  ||||   || | ||||||  |||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  18655480 agaaaacaggaaaaacgagacgaccctttgtcttgtagcagtgaatgatgcggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaa 18655579  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| || ||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||| || ||||| ||||| ||||||||||| |||    
T  18655580 cacaggaataaagatcctagactcttgaatggcattgtcgagtgatggtttgatttcatccccactttgcagctcacggtcatcaatgaaggtgtggatt 18655679  T
Q  226 cccttgtcagtaagagccttgtagagat 253  Q
    ||||||||||||||||| ||||||||||    
T  18655680 cccttgtcagtaagagctttgtagagat 18655707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 69 - 253
Target Start/End: Original strand, 29273829 - 29274013
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||| |||||||    
T  29273829 aatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaaaattctagactcttcaatgacattgtcgagt 29273928  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagat 253  Q
    |||  |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  29273929 gatgatttgatttcatcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagtcttgtagagat 29274013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 254
Target Start/End: Complemental strand, 31903970 - 31903794
Alignment:
Q  78 gacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttg 177  Q
    |||||||||||  || |||||||| ||||| ||||||||   ||| | ||||  ||||  |||||||||||||||||| || ||    |||||| || ||    
T  31903970 gacaagttcatgtaagcaaaatgaagaagaagcatagtttttagagagcacaataatggcaatcctagactcttcaattgcctctaaaagtgatggtgtg 31903871  T
Q  178 atttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagatt 254  Q
    |||||||  ||||||||||||||   ||| || || |||||||| |||||||| |||  |||||| |||||||||||    
T  31903870 atttcatgtcctctttgaagttcttcatcgtcaataaaggtgtggattcccttatcataaagagctttgtagagatt 31903794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 31 - 262
Target Start/End: Original strand, 3439 - 3674
Alignment:
Q  31 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatag-ttgacagaaaac 126  Q
    |||||||||| ||||| ||||||||||  ||||   || | |||||| ||||||||||| |||||||||||||| |||||||||||| |||| |||||||    
T  3439 aaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcataggttgatagaaaac 3538  T
Q  127 acaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattc 226  Q
    |||||||| ||||||||||| || |||||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| || ||||    
T  3539 acaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattc 3638  T
Q  227 ccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    |||||||||||||||||||||||||||| |||||||    
T  3639 ccttgtcagtaagagccttgtagagatttccggtaa 3674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 29 - 262
Target Start/End: Original strand, 14372 - 14607
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||||| ||||||||||  ||||   || | ||| || ||||||||||| ||||||||||| || ||| |||||||||||| ||||||    
T  14372 agaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaa-aggcatagttgatagaaaa 14470  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||| || |||||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| || |||    
T  14471 cacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggatt 14570  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||||||||||||||||||||||||||||| |||||||    
T  14571 cccttgtcagtaagagccttgtagagatttccggtaa 14607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 29 - 262
Target Start/End: Original strand, 4687 - 4923
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||||| ||||||||||  ||||   || | ||| || ||||||||||| ||||||||||| || ||| ||||||||  || ||||||    
T  4687 agaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaaaaggcatagaagatagaaaa 4786  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||| || |||||||| | |  ||| ||| || |||||||||| ||||||||||| |||   ||||| |||||||| |  |||    
T  4787 cacaggaataaaaatcctagattcatcaatggccttgcggagggatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgatt 4886  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    ||||||||||||||||||||||||||||| |||||||    
T  4887 cccttgtcagtaagagccttgtagagatttccggtaa 4923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 29 - 262
Target Start/End: Original strand, 13648 - 13884
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||||| |||||| |||  ||||   |||| ||| || || |||||||| ||||| ||||||   |||| ||| ||||||| ||||||    
T  13648 agaaaacaggcaaaacgaggcgaccttttgtcttgtagcaatgaataatgtgaacaagttcgtccaagcaaaattttgaagtggcgtagttgatagaaaa 13747  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||| ||||| ||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| |  |||    
T  13748 cacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgatt 13847  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    |||||||||||||||||||||||||||||||||||||    
T  13848 cccttgtcagtaagagccttgtagagattgccggtaa 13884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 7696 - 7460
Alignment:
Q  29 agaaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 125  Q
    |||||||||||||||||| |||||| | |  ||||   |||| ||| || || |||||||| ||||| ||||||   |||| ||| ||||||| ||||||    
T  7696 agaaaacaggcaaaacgaggcgaccttctgtcttgtagcaatgaataatgtgaacaagttcgtccaagcaaaattttgaagtggcgtagttgatagaaaa 7597  T
Q  126 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 225  Q
    ||||||||| ||||||||||| ||||| ||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| |  |||    
T  7596 cacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgatt 7497  T
Q  226 cccttgtcagtaagagccttgtagagattgccggtaa 262  Q
    |||||||||||||||||||||||||||||||||||||    
T  7496 cccttgtcagtaagagccttgtagagattgccggtaa 7460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 103 - 262
Target Start/End: Original strand, 10 - 169
Alignment:
Q  103 gaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcac 202  Q
    |||| ||| ||||||| ||||||||||||||| ||||||||||| ||||| ||||| | |  ||||||| || |||||||||| ||||||||||| |||     
T  10 gaagtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcat 109  T
Q  203 gatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggtaa 262  Q
      ||||| |||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  110 tgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaa 169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 69 - 232
Target Start/End: Complemental strand, 34853 - 34690
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || |||||||||||||||||||||||||||||||| | |   |||    
T  34853 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagt 34754  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgt 232  Q
    ||| || | |||||||| |||| |||||| || |  ||||| ||||||||||| ||||||||||    
T  34753 gatggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgt 34690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 43094 - 43005
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 158  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || ||||||||||||||||||||||||||||||||    
T  43094 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggc 43005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 27582 - 27415
Alignment:
Q  63 gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcg 162  Q
    ||||| |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || |||||||||||||||||||| ||||||||| | | |    
T  27582 gcaatgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttg 27483  T
Q  163 tcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattccctt 230  Q
       ||||||  | | |||||||| |||| |||||| || | |||||| | ||| ||||||||||||||    
T  27482 aaaagtgatgatgttatttcatcacctccttgaagctctctatcatcaaagaatgtgtgaattccctt 27415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 116917 - 116835
Alignment:
Q  76 tggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 158  Q
    ||||||||||||||||| ||||| || ||||| ||||| |||| ||| || | ||||||||||||||||||||||||||||||    
T  116917 tggacaagttcatccaagcaaaaggaagaagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggc 116835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 254
Target Start/End: Original strand, 58341 - 58526
Alignment:
Q  69 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 168  Q
    |||||| ||||||||||| | ||| |||||||| ||||| |||||||||| ||| || || |||||||||||||||||||||| |||||| | |   |||    
T  58341 aatgatgtggacaagttcgttcaagcaaaatgaagaagaagcatagttgatagacaagacgggaatgaaaatcctagactctttaatggccttgaaaagt 58440  T
Q  169 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagatt 254  Q
    ||| || | ||||| || |||| |||||| || |  ||||||||||||||  | ||||||||||||  ||||||  ||||||||||    
T  58441 gatggtgttatttcgtcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctgtagagatt 58526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 219
Target Start/End: Complemental strand, 3279822 - 3279666
Alignment:
Q  63 gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcg 162  Q
    ||||| |||||| ||||||||||| ||||||||||||   ||||| |||||||||| ||| || || ||||| |||||| | |||||||| ||||| | |    
T  3279822 gcaatgaatgatgtggacaagttcgtccaaacaaaatatagaagaagcatagttgatagagaagaccggaataaaaatcatggactcttcgatggccttg 3279723  T
Q  163 tcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtg 219  Q
     | |||||| || |||||||||| ||||  ||||| || | |||||| |||||||||    
T  3279722 acaagtgattgtgtgatttcatcacctccatgaagctccctatcatcaatgaaggtg 3279666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 17993850 - 17993934
Alignment:
Q  176 tgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattgccggt 260  Q
    |||||||||| ||||| ||||| ||    ||||| ||||||||  ||||||||||||||| |||||| || |||||||| |||||    
T  17993850 tgatttcatcacctctctgaagctctttgtcatcgatgaaggttcgaattcccttgtcagaaagagctttatagagattaccggt 17993934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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