View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1143_low_14 (Length: 258)
Name: NF1143_low_14
Description: NF1143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1143_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 39210774 - 39210546
Alignment:
| Q |
1 |
tcctgtgacacctaatttgatctttgctccttcaatcaacttacgcgcgctgcacaatgcttgccattcaccagaaaaaacacatgacaactgttcatca |
100 |
Q |
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| T |
39210774 |
tcctgtgacacctaatttgatctttgctccttcaatcaacttatgcgcgctgcacaatgcttgccattcaccagaaaaaacacatgacaaccgttcatca |
39210675 |
T |
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| Q |
101 |
tgacaaaaatccgttaacaactttcaagtattcccaggcaatcaatgacagttaattcaattttctcagcccgaaatgcagattgacaaaagtcaagcca |
200 |
Q |
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| T |
39210674 |
tgacaaaaatccgtaaacaacttccaagtatttccaggcaatcaatgacagttaattcaattttctcagcctgaaatgcagattgacaaaagtcaagcca |
39210575 |
T |
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| Q |
201 |
attcaaattctgcatatagacaatcatac |
229 |
Q |
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| T |
39210574 |
attcaaattctgcatatagacaatcatac |
39210546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 27510163 - 27510379
Alignment:
| Q |
5 |
gtgacacctaatttgatctttgctccttcaatcaacttacgcgcgctgcacaatgcttgccattcaccagaaaaaacacatgacaactgttcatcatgac |
104 |
Q |
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| T |
27510163 |
gtgacacctaatttgatctttgctccttcaatcaacttacgcgcgctgcacaatgcttgccattcaccagaaaaaacacatgacaactgt---tcatgac |
27510259 |
T |
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| Q |
105 |
aaaaatccgttaacaactttcaagtat-tcccaggcaatcaatgacagttaattcaattttctcagcccgaaatgcagattgacaaaagtcaagccaatt |
203 |
Q |
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| T |
27510260 |
aaaaatccgtaaacaacttccaagtatagcccaggcaatcaatgacagttgattcagttttcccagcccgaaatgcagattgacaaaagccaagccaatt |
27510359 |
T |
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| Q |
204 |
caaattctgcatatagacaa |
223 |
Q |
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| T |
27510360 |
caaattctgcatatagacaa |
27510379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 27271235 - 27271016
Alignment:
| Q |
5 |
gtgacacctaatttgatctttgctccttcaatcaacttacgcgcgctgcacaatgcttgccattcaccagaaaaaacacatgacaactgttcatcatgac |
104 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||| |
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| T |
27271235 |
gtgacacctaatttgatatttgctccttcaatcaacttacgcgcgttgcacaatgtttgccattcaccagaaaaatcacatgacagctgttcattatgac |
27271136 |
T |
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| Q |
105 |
aaaaatccgttaacaactttcaagt-attcccaggcaatcaatgacagttaattcaattttctcagcccgaaatgcagattgacaaaagtcaagccaatt |
203 |
Q |
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| T |
27271135 |
agaattccataaacaacttccaagtaaagcccaggaaatcaatgacagttaattcagttttcacagccggaaatgcagattgacaaaagccaagccaatt |
27271036 |
T |
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| Q |
204 |
caaattctgcatatagacaa |
223 |
Q |
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|||||| |||| |||||||| |
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| T |
27271035 |
caaattatgcacatagacaa |
27271016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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