View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1143_low_15 (Length: 251)
Name: NF1143_low_15
Description: NF1143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1143_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 35350892 - 35351093
Alignment:
| Q |
22 |
ctctataattggagggactaaaatcatagttaatccttttattaaccacaaatttggaggcgatcaaccacaaattttcaggtgttcaaatctacatgta |
121 |
Q |
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| T |
35350892 |
ctctataattggagggactaaaatcatagttaatccttttattaaccacaaatttggaggcgatcaaccacaaattttcaggtgttcaaatctacatgta |
35350991 |
T |
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| Q |
122 |
gttaaacacttgacaattgtggttaatgaagttattaatgagttttgaaacaatgtatattctttaacaatatattggaatcacgttaaccacatagaaa |
221 |
Q |
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| T |
35350992 |
gttaaacacttgacaattgtggttaatgaagttattaatgagtttcgaaacaatgtatattctttaacaatatattggaatcacgttaaccacatagaaa |
35351091 |
T |
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| Q |
222 |
gt |
223 |
Q |
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|| |
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| T |
35351092 |
gt |
35351093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 2932222 - 2932260
Alignment:
| Q |
96 |
ttttcaggtgttcaaatctacatgtagttaaacacttga |
134 |
Q |
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| T |
2932222 |
ttttcaggtgttcaaatctacatgtatttgaacacttga |
2932260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 27670283 - 27670343
Alignment:
| Q |
69 |
acaaatttggaggcgatcaaccacaaattttcaggtgttcaaatctacatgtagttaaacac |
130 |
Q |
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| T |
27670283 |
acaaatttggacgcgattaacta-aaattttcatgtgttcaaatctacatgtagttgaacac |
27670343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 29136839 - 29136927
Alignment:
| Q |
58 |
ttttattaaccacaaatttggaggcgatcaaccacaaattttcaggtgttcaaatctacatgtagttaaacacttgacaattgtggttaa |
147 |
Q |
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| T |
29136839 |
tttttttaaccacaaatttatatgtgattaaccacaa-tttgaaggtgttcaaatctacatgtagttgaacatctgaaaattatggttaa |
29136927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 27891328 - 27891395
Alignment:
| Q |
62 |
attaaccacaaatttggaggcgatcaaccacaaattttcaggtgttcaaatctacatgtagttaaacac |
130 |
Q |
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| T |
27891328 |
attaaccacaaacttggacgtgattaaccccaa-ttttgaggtgtttaaatctacatgtagttgaacac |
27891395 |
T |
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