View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1143_low_2 (Length: 554)
Name: NF1143_low_2
Description: NF1143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1143_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 45 - 485
Target Start/End: Original strand, 13135190 - 13135630
Alignment:
| Q |
45 |
gagcagagaaggcaacaagtggggacattattgaagaaggtagaatcggatatgtgtcatatactaagacaaaaggatgaacaaatagcgcaagcgacaa |
144 |
Q |
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| T |
13135190 |
gagcaaagaaggcagcaagtggggacattattgaagaaggtagaatcggatatgtgtcatatactaagacaaaaggatgaacaaatagcacaagcgacaa |
13135289 |
T |
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| Q |
145 |
agaaaaggttggagctggaacaattcttgatcagactagaaacagataatcaaatgtggcggagagcttctcgggaaaatgaagctatggtgttgtccct |
244 |
Q |
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| T |
13135290 |
agaaaaggttggagctggaacaattcttgatcagactagaaacagataatcaaatgtggcggagagcttctcgggaaaatgaagctatggtgttgtccct |
13135389 |
T |
|
| Q |
245 |
caataacgccttagaacaaatcaaagaaagaacattggctatagaagaagtagagtcatgttgtgacatgaaaaatcatgaagaagaaacatgggaaaac |
344 |
Q |
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| T |
13135390 |
caataacgccttagaacaaatcaaagaaagaacattggctatagaagaagtagagtcatgttgtgacatgaaaaatcatgaagaagaaacatgggaaaac |
13135489 |
T |
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| Q |
345 |
acaagtctaaacacaatttgcaaatgttgttattcacaagagtcatcttttatgttccttccttgcaggcacctatgttcttgtaaatcatgtgaacctt |
444 |
Q |
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| T |
13135490 |
acaagtctaaacacaatttgcaaatgttgttattcacaagagtcatcttttatgttccttccttgcaggcacctatgttcatgtaaatcatgtgaacctt |
13135589 |
T |
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| Q |
445 |
ctctccaaacatgtcctgtgtgcttaatgccaaagagatct |
485 |
Q |
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| T |
13135590 |
ctctccaaacatgtcctgtgtgcttaatgccaaagagatct |
13135630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 67 - 310
Target Start/End: Original strand, 55208744 - 55208990
Alignment:
| Q |
67 |
ggacattattgaagaaggtagaatcggatatgtgtcatatactaagacaaaaggatgaacaaatagcgcaagcgacaaagaaaaggttggagctggaaca |
166 |
Q |
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| T |
55208744 |
ggacaatattgaagaaggtagaatatgatgtgtttcatatactaagacaaaaggatgaacaaattgcacaagcgacgaagaaaaggatggagttggaaca |
55208843 |
T |
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| Q |
167 |
attcttgatcagactagaaacagataatcaaatgtggcggagagcttctcgggaaaatgaagctatggtgttgtccctcaataacgccttagaacaaatc |
266 |
Q |
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| T |
55208844 |
atttttgacaagactagagacagagaatcaatcatggcggagagctgcacatgaaaatgaagctatggtgttatcgctcaataacgccttagaatctatc |
55208943 |
T |
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| Q |
267 |
aaagaa---agaacattggctatagaagaagtagagtcatgttgtga |
310 |
Q |
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| T |
55208944 |
aaagaaattagagcattggtagtagaagatgtagagtcatgttgtga |
55208990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 360 - 485
Target Start/End: Original strand, 55209016 - 55209141
Alignment:
| Q |
360 |
atttgcaaatgttgttattcacaaga-gtcatcttttatgttccttccttgcaggcacctatgttcttgtaaatcatgtgaaccttctctccaaacatgt |
458 |
Q |
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||||||||||||||| ||||| | || ||| |||||||||||||||||||||||||| || ||||| |||||| | |||||||||||||||||| ||||| |
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| T |
55209016 |
atttgcaaatgttgtcattca-aggatgtcgtcttttatgttccttccttgcaggcatctttgttcgtgtaaagcgtgtgaaccttctctccaagcatgt |
55209114 |
T |
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| Q |
459 |
cctgtgtgcttaatgccaaagagatct |
485 |
Q |
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| T |
55209115 |
cctgtgtgcctcatgccaaagagatct |
55209141 |
T |
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