View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1143_low_3 (Length: 531)
Name: NF1143_low_3
Description: NF1143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1143_low_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 30 - 531
Target Start/End: Complemental strand, 10569944 - 10569458
Alignment:
| Q |
30 |
gggtggaaataagattcagtgcagtgaatatctataatggctagaaattttggcccagtatggaccaatacatatacggattcatcctaaacgcccaccg |
129 |
Q |
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| T |
10569944 |
gggtggaaataagattcagtgtggtgaatatctataatggctagaaattttggcccagtatggaccaatacatatacggattcatcctaaacgcc-accg |
10569846 |
T |
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| Q |
130 |
tgaatgagttggtctgaaagtttgttgtagtgtactactattatgattgcatttttgaaaacctttatattatattgattaatatatggtatcaaggatt |
229 |
Q |
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| T |
10569845 |
tgaatgagttggtctgaaagtttgttgtagtgtactactattatgattgcatttttgaaaacctttatattatattgattaatatatggtatcaaggatt |
10569746 |
T |
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| Q |
230 |
atttccaaatcacgtttttatttttagttgttggttatgtattacgttttgattttccacatattaatttcctgcattttttatcttgctatactggt-t |
328 |
Q |
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| T |
10569745 |
atttccaaatcacgtttttatttttagttgttggttatgtattacgttttgattttccacatattaatttcctgcattttttatcttgctatactggttt |
10569646 |
T |
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| Q |
329 |
tttatatgacaagaatgagttaaaaagagaattcaggacattttcttaccatatccttgtgtaatctatctcctgtcttgcatagaaagcatatagttga |
428 |
Q |
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| T |
10569645 |
tttatatgacaagaatgagttaaaaagagaattcaggacatgttcttaccatatccttgtgtaatctatctcctgtcttgcatagaaaacatatagttga |
10569546 |
T |
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| Q |
429 |
cgctgttcgttgtaattgtgtttgacaggatcacgttcttgctgttgtcgttgcacctaacatgatatgcgtttcagagcaatcaaccatcgctacttgt |
528 |
Q |
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| T |
10569545 |
cgctgttcgttgtcattgtgtttgacaggatca---------------cgttgcacctaacatgatatgcgtttcagagcaatcaaccatcgctacttgt |
10569461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 198 - 531
Target Start/End: Complemental strand, 10552279 - 10551927
Alignment:
| Q |
198 |
attatattgattaatatatggtatcaaggattatttccaaatcacgtttttatttttagttgttggttatgtattacgttttgattttccacatattaat |
297 |
Q |
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| T |
10552279 |
attatattgattaatatatggtataaaggattatttcaaaatcacgttttgattttcaattgtgggttctatattacattttgattttc-acatactaat |
10552181 |
T |
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| Q |
298 |
ttcctgcattttttatcttgctatactggttttt-atatga-------------------caagaatgagttaaaaagagaattcaggacattttcttac |
377 |
Q |
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| T |
10552180 |
ttgttgcattttgtgttttgctacactgcttttttatatgataggtttgtatacgaaacacaagaatgagttgaaaaaagaatttaggacatgttcttac |
10552081 |
T |
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| Q |
378 |
catatccttgtgtaatctatctcctgtcttgcatagaaagcatatagttgacgctgttcgttgtaattgtgtttgacaggatcacgttcttgctgttgtc |
477 |
Q |
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| T |
10552080 |
catatccttgtgtaatatatctcctgtcttgcatagaaaacatatagttgacggtgttcgttgtgattgtgtttgacaggatcacgttcttgctgttgtc |
10551981 |
T |
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| Q |
478 |
gttgcacctaacatgatatgcgtttcagagcaatcaaccatcgctacttgttga |
531 |
Q |
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| T |
10551980 |
gttgcacctaacatgatatgtgttccagagcaatcaaccatcgctacttgttga |
10551927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 10552359 - 10552317
Alignment:
| Q |
129 |
gtgaatgagttggtctgaaagtttgttgtagtgtactactatt |
171 |
Q |
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| T |
10552359 |
gtgaatgagttggtctgaaaccttgttgtagtgtactactatt |
10552317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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