View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1143_low_8 (Length: 397)
Name: NF1143_low_8
Description: NF1143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1143_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 370
Target Start/End: Complemental strand, 50806876 - 50806516
Alignment:
| Q |
10 |
ccacagaatctatacaaccaaatcaaaaagctaacaacccattaaccttnnnnnnnnnnnnnnnnntaatctattaattcactttggttattgatggtat |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50806876 |
ccacagaatctatacaaccaaatcaaaaagctaacaacccattaaccttaaaaaaaaacaaaaaaataatctattaattcactttggttattgatggtat |
50806777 |
T |
|
| Q |
110 |
actaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatttcaaagcaacttatatgaaaactatttgact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50806776 |
actaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatttcaaagcaacttatatgaaaactatttgact |
50806677 |
T |
|
| Q |
210 |
ttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatggaacctttatggtaaaatgccaatacctgcc |
309 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50806676 |
ttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatggaacctttatggtaaaatgccaatacctgcc |
50806577 |
T |
|
| Q |
310 |
atgatatactcaggagcagcatagccatttgttcccatcatgcatgttgttgtcacatgtg |
370 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50806576 |
atgatatactcaggagcagcatagccatttgttcccatcatgcatgttgttgtcacatgtg |
50806516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 50869001 - 50869361
Alignment:
| Q |
10 |
ccacagaatctatacaaccaaatcaaaaagctaacaacccattaaccttnnnnnnnnnnnnnnnnntaatctattaattcactttggttattgatggtat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50869001 |
ccacagaatctatacaaccaaatcaaaaagctaacaacccattaaccttaaaaaaaaacaaaaaaataatctattaattcactttggttattgatggtat |
50869100 |
T |
|
| Q |
110 |
actaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatttcaaagcaacttatatgaaaactatttgact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50869101 |
actaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatttcaaagcaacttatatgaaaactatttgact |
50869200 |
T |
|
| Q |
210 |
ttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatggaacctttatggtaaaatgccaatacctgcc |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50869201 |
ttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatggaacctttatggtaaaatgccaatacctgcc |
50869300 |
T |
|
| Q |
310 |
atgatatactcaggagcagcatagccatttgttcccatcatgcatgttgttgtcacatgtg |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50869301 |
atgatatactcaggagcagcatagccatttgttcccatcatgcatgttgttgtcacatgtg |
50869361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 44196004 - 44196345
Alignment:
| Q |
10 |
ccacagaatctatacaaccaaatcaaaaagctaacaacccattaaccttnnnnnnnnnnnnnnnnntaatctattaattcactttggttattgatggtat |
109 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44196004 |
ccacagaatctacacaaccaaatcaaaaagctaacaacccattaaccttaaaaaaacaaaaaa---taatctattaattcactttggttattgatggtat |
44196100 |
T |
|
| Q |
110 |
actaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatttcaaagcaacttatatgaaaactatttgact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44196101 |
actaagtaatttacactcacaattctttgatgcataaaactgcaggtcactggagatccaaacccaatttcaaagcaacttatatgaaaactatttgact |
44196200 |
T |
|
| Q |
210 |
ttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatggaacctttatggtaaaatgccaatacctgcc |
309 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44196201 |
ttattttaaataaaaacagcttatacataagcgc----------------taagttgtttatccaaatggaacctttatggtaaaatgccaatacctgcc |
44196284 |
T |
|
| Q |
310 |
atgatatactcaggagcagcatagccatttgttcccatcatgcatgttgttgtcacatgtg |
370 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
44196285 |
atgatatactcaggagcagcatagccttttgttcccattatgcatgttgttgtcacatgtg |
44196345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 185 - 370
Target Start/End: Complemental strand, 48554026 - 48553841
Alignment:
| Q |
185 |
caacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatggaacct |
284 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48554026 |
caacttttatgaaaacaatctgactttattttatataaaaatagcttatacataaacgcttatgctataagtgcttaagttgttaatccaaatggaacct |
48553927 |
T |
|
| Q |
285 |
ttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgttgttgtcacatgtg |
370 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
48553926 |
atatggtaaaatgccaatacctgacatgatatactcaggagcagcatagccttttgttcccattatgcatgttgttgtcacatgtg |
48553841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 218
Target Start/End: Complemental strand, 26599176 - 26599146
Alignment:
| Q |
188 |
cttatatgaaaactatttgactttattttat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
26599176 |
cttatatgaaaactatttgactttattttat |
26599146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 33929668 - 33929620
Alignment:
| Q |
10 |
ccacagaatctatacaaccaaatcaaaaagctaacaacccattaacctt |
58 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33929668 |
ccacagaatctacacaaccaaatcaaaaagctaacaacccattaacctt |
33929620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 31038937 - 31038969
Alignment:
| Q |
186 |
aacttatatgaaaactatttgactttattttat |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
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|
| T |
31038937 |
aacttatatgaaaacaatttgactttattttat |
31038969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 39362118 - 39362045
Alignment:
| Q |
186 |
aacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaa |
262 |
Q |
| |
|
|||||| |||||||| |||||||||| || || |||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
39362118 |
aacttacatgaaaacaatttgacttttatt---atgaaaatagcttatacataagtgcttatgctataagtgcttaa |
39362045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 39591530 - 39591569
Alignment:
| Q |
179 |
tcaaagcaacttatatgaaaactatttgactttattttat |
218 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
39591530 |
tcaaaacaacttatatgaaaacaatttgactttattttat |
39591569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 30456520 - 30456552
Alignment:
| Q |
186 |
aacttatatgaaaactatttgactttattttat |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
30456520 |
aacttatatgaaaacaatttgactttattttat |
30456552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 35536107 - 35536075
Alignment:
| Q |
186 |
aacttatatgaaaactatttgactttattttat |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
35536107 |
aacttatatgaaaacaatttgactttattttat |
35536075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 2732311 - 2732360
Alignment:
| Q |
188 |
cttatatgaaaactatttgactttattttatataaaaacagcttatacataa |
239 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
2732311 |
cttatatgaaaataatttgactttattt--tataaaaatagcttatacataa |
2732360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 33944603 - 33944571
Alignment:
| Q |
188 |
cttatatgaaaactatttgactttattttatat |
220 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
33944603 |
cttatatgaaaacaatttgactttattttatat |
33944571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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