View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1143_low_9 (Length: 377)

Name: NF1143_low_9
Description: NF1143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1143_low_9
NF1143_low_9
[»] chr1 (4 HSPs)
chr1 (30-238)||(15593484-15593691)
chr1 (246-302)||(15593324-15593380)
chr1 (323-368)||(15593254-15593299)
chr1 (58-135)||(861889-861966)
[»] chr7 (3 HSPs)
chr7 (54-96)||(42720925-42720967)
chr7 (65-108)||(9483377-9483420)
chr7 (61-123)||(31924415-31924477)
[»] chr8 (2 HSPs)
chr8 (59-119)||(32145224-32145284)
chr8 (54-98)||(25831682-25831726)
[»] chr4 (2 HSPs)
chr4 (58-96)||(5096131-5096169)
chr4 (57-122)||(43093534-43093599)
[»] chr2 (1 HSPs)
chr2 (58-96)||(12940970-12941008)
[»] chr3 (3 HSPs)
chr3 (65-134)||(26656716-26656785)
chr3 (63-144)||(51733135-51733216)
chr3 (80-144)||(49636813-49636877)
[»] chr6 (1 HSPs)
chr6 (54-130)||(10038445-10038520)
[»] chr5 (1 HSPs)
chr5 (72-124)||(9895147-9895199)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 15593691 - 15593484
Alignment:
Q  30 tataaagcttgaacttgaacacctacatgacattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgt 129  Q
    |||||||||||||| ||||  | |||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||||||| ||||||||    
T  15593691 tataaagcttgaacgtgaatgcttacatgacattgacacattgacaccactaataatttgaaaaaatagattaatcgaacatagtcacatgcgtttgtgt 15593592  T
Q  130 cgtgtcagtgctacataggtcttgattaatcaactttcctatcaatgcggcagactataagtttccaattcaagcaactacaaagcctgtaaatcccaat 229  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||| ||||     
T  15593591 cgtgtcagtgctacataggtcttgattcatcaactttcctatcaatgtgggagactataag-ttccaattcaagtaactacaaagcctgtaaattccaac 15593493  T
Q  230 atactagca 238  Q
     ||||||||    
T  15593492 ttactagca 15593484  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 15593380 - 15593324
Alignment:
Q  246 gagcaagaatgaagtgttgtcacttgccatcactcatcctggtttcctctattaggg 302  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||    
T  15593380 gagcaagaatgaagtgttgtcacttgcaatcactcaccgtggtttcctctatcaggg 15593324  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 15593299 - 15593254
Alignment:
Q  323 gaacaagccaccacaccatcctcatcagttccattccacttcatat 368  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||    
T  15593299 gaacaagccaccacaccatcctcgttagttccattccacttcatat 15593254  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 861966 - 861889
Alignment:
Q  58 gacattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtc 135  Q
    ||||| ||||||||||||| | |||||||||||||||||   | ||||||| |||||||| |||| | | ||||||||    
T  861966 gacatagacacgttgacactagtaataatttgaaaaaatgacaaaattgaaagtagtcacgtgtgatggggtcgtgtc 861889  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 42720967 - 42720925
Alignment:
Q  54 acatgacattgacacgttgacaccactaataatttgaaaaaat 96  Q
    |||||||| ||||||||||||||| ||||||||||||||||||    
T  42720967 acatgacactgacacgttgacaccgctaataatttgaaaaaat 42720925  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 9483377 - 9483420
Alignment:
Q  65 acacgttgacaccactaataatttgaaaaaatagaataattgaa 108  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||    
T  9483377 acacattgacaccaataataatttgagaaaatagaataattgaa 9483420  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 31924415 - 31924477
Alignment:
Q  61 attgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgt 123  Q
    |||||||||||||||||  ||||||||| | ||||||||| |||||||  || ||||||||||    
T  31924415 attgacacgttgacaccgataataatttaagaaaatagaacaattgaatataatcacatgtgt 31924477  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 32145224 - 32145284
Alignment:
Q  59 acattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacat 119  Q
    |||||||||| || |||||| ||||||||||| ||||| |||||||| |||||| ||||||    
T  32145224 acattgacactttaacaccagtaataatttgagaaaatggaataattaaacgtaatcacat 32145284  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 25831726 - 25831682
Alignment:
Q  54 acatgacattgacacgttgacaccactaataatttgaaaaaatag 98  Q
    |||| |||||||||||| ||||||||||||||||| | |||||||    
T  25831726 acataacattgacacgtagacaccactaataatttaagaaaatag 25831682  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 5096169 - 5096131
Alignment:
Q  58 gacattgacacgttgacaccactaataatttgaaaaaat 96  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  5096169 gacattgacacgtcgacaccgctaataatttgaaaaaat 5096131  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 43093599 - 43093534
Alignment:
Q  57 tgacattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtg 122  Q
    ||||| ||||||||  |||||  ||||||||||||||||| | ||||||||| ||| |||||||||    
T  43093599 tgacactgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaatcacatgtg 43093534  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 12941008 - 12940970
Alignment:
Q  58 gacattgacacgttgacaccactaataatttgaaaaaat 96  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  12941008 gacactgacacgttgacacaactaataatttgaaaaaat 12940970  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 26656785 - 26656716
Alignment:
Q  65 acacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgt 134  Q
    ||||||||||| || || ||||||| ||||||| ||||||| || |||  ||||||||||||||| ||||    
T  26656785 acacgttgacaacagtagtaatttggaaaaataaaataattcaatgtaaccacatgtgtttgtgttgtgt 26656716  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 51733135 - 51733216
Alignment:
Q  63 tgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctaca 144  Q
    ||||| |||||||||  |||||| |||| ||||||||||||||||||||   || ||||||  |||| ||||| ||||||||    
T  51733135 tgacaggttgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctaca 51733216  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 49636877 - 49636813
Alignment:
Q  80 taataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctaca 144  Q
    ||||||||||| |||||  | |||||||| ||| ||||||| | | |||||||||||||||||||    
T  49636877 taataatttgagaaaatgaattaattgaatgtaatcacatgcgctggtgtcgtgtcagtgctaca 49636813  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 10038520 - 10038445
Alignment:
Q  54 acatgacattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtc 130  Q
    |||||||||||||||||| |||||  |||||  | || |||||||||||||||||  || ||||||||||| |||||    
T  10038520 acatgacattgacacgttaacaccggtaatacct-gagaaaatagaataattgaatataatcacatgtgttggtgtc 10038445  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 9895147 - 9895199
Alignment:
Q  72 gacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtt 124  Q
    ||||||| ||||||||||| |||||| | || ||||||||| |||||||||||    
T  9895147 gacaccagtaataatttgagaaaataaattatttgaacgtaatcacatgtgtt 9895199  T

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