View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11440_low_2 (Length: 614)
Name: NF11440_low_2
Description: NF11440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11440_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 20 - 593
Target Start/End: Complemental strand, 5771230 - 5770654
Alignment:
| Q |
20 |
aatgagaggtaacatttttataattagaagttattggacaaaatcttcaataatttagttgtgtattcttatctttcttaaattggtgatttacatggtt |
119 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5771230 |
aatgagaggtaacgtttttataattagaagttattggacaaaatctttaataatttagttgtgtattcttatctttcttaaattggtgatttacatgttt |
5771131 |
T |
|
| Q |
120 |
taannnnnnnn-catccattatgagtatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcataaataacataaagttgctcat |
218 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5771130 |
taatttttttttcattcattatgagtatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcataaataacataaagttgctcat |
5771031 |
T |
|
| Q |
219 |
gtactccctaaaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaatgnnnnnnnnnn--atctcttttaccatatgttctgtaatt |
316 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| |
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| T |
5771030 |
gtactccctagaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaaagttttttttttttatctcttttaccacatgttctgtaatt |
5770931 |
T |
|
| Q |
317 |
atgtacataaattggggttaaactgtgcataaaagttaccgatgtatgatctatctttctttcttactctttttnnnnnnntatgcagaggctaattgtg |
416 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
5770930 |
atgtacacaaattggggttaaactgtgcataaaagttactgatgtatgatgtatctttctttcttactctttttaaaaaaatatgcagagactaattgtg |
5770831 |
T |
|
| Q |
417 |
gttcatttgttttcgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagt |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5770830 |
gttcatttgttttcgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaaaaaatattagcagggttcaaagt |
5770731 |
T |
|
| Q |
517 |
tcatgttaatagcactaatttgtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
593 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5770730 |
tcatgttaatagcactaattggtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
5770654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 20 - 593
Target Start/End: Original strand, 33866822 - 33867395
Alignment:
| Q |
20 |
aatgagaggtaacatttttataattagaagttattggacaaaatcttcaataatttagttgtgtattcttatctttcttaaattggtgatttacatggtt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33866822 |
aatgagaggtaacatttttataattagaagttattggacaaaatctttaataatttagttgtgtattcttatctttcttaaattggtgatttacatgttt |
33866921 |
T |
|
| Q |
120 |
taannnnnnnn-catccattatgagtatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcataaataacataaagttgctcat |
218 |
Q |
| |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33866922 |
taatttttttttcattcattatgagtatagtgtagtattttggttcattggcattgaaataataatcttgctgcatcataaataacataaagttgctcat |
33867021 |
T |
|
| Q |
219 |
gtactccctaaaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaatgnnnnnnnnnnatctcttttaccatatgttctgtaattat |
318 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
33867022 |
gtactccctagaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaaagttttttttt-atctcttttaccatatgttctgtaattat |
33867120 |
T |
|
| Q |
319 |
gtacataaattggggttaaactgtgcataaaagttaccgatgtatgatctatctttctttcttactctttttnnnnnnntatgcagaggctaattgtggt |
418 |
Q |
| |
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||||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
33867121 |
gtacacaaattggtgttaaactgtgcataaaagttactgatgtatgatgtatctttctttcttactctttttaaaaaaatatgcagagtctaattgtggt |
33867220 |
T |
|
| Q |
419 |
tcatttgttttcgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagttc |
518 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33867221 |
tcatttgttttcctgtttatacatcaacgcatgcctgatccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagttc |
33867320 |
T |
|
| Q |
519 |
atgttaatagcactaatttgtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
593 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33867321 |
atgttaatagcactaattggtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
33867395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 530 - 594
Target Start/End: Original strand, 43904661 - 43904725
Alignment:
| Q |
530 |
actaatttgtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtct |
594 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |
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| T |
43904661 |
actaattggtccattttgcatatttgagtatggtaatgttgtaaagttgacttggtttgtagtct |
43904725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 5894466 - 5894390
Alignment:
| Q |
144 |
tatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcataaataacataaagttgctcatgt |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
5894466 |
tatagtgtagtattttggttcattggcattgagataataaccttgctccatcataaataacataaacttgctcatgt |
5894390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 211 - 386
Target Start/End: Complemental strand, 5894221 - 5894049
Alignment:
| Q |
211 |
ttgctcatgtactccctaaaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaatgnnnnnnnnnnatctcttttaccatatgttct |
310 |
Q |
| |
|
||||||||||| || ||| ||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| | |
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| T |
5894221 |
ttgctcatgtattcactagaaaagtctgaattatgatgtatctttctgtctcttttgataattggaa---actctttgtatctcttttaccacatgtttt |
5894125 |
T |
|
| Q |
311 |
gtaattatgtacataaattggggttaaactgtgcataaaagttaccgatgtatgatctatctttctttcttactct |
386 |
Q |
| |
|
||||||||| ||| ||||| ||||||| |||||||||||||| | || ||||| | ||||||||||| ||||||| |
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|
| T |
5894124 |
gtaattatgcacacaaattagggttaatttgtgcataaaagttgctgacgtatgctgtatctttcttttttactct |
5894049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 5894561 - 5894501
Alignment:
| Q |
64 |
cttcaataatttagttgtgtattctta--tctttcttaaattggtgatttacatggtttaa |
122 |
Q |
| |
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|||||||||||||| |||||||||||| ||| ||||||||||||||| |||| ||||||| |
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|
| T |
5894561 |
cttcaataatttaggtgtgtattcttatctctctcttaaattggtgatatacacggtttaa |
5894501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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