View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11440_low_3 (Length: 434)

Name: NF11440_low_3
Description: NF11440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11440_low_3
NF11440_low_3
[»] chr5 (15 HSPs)
chr5 (16-427)||(1043774-1044185)
chr5 (16-423)||(1033386-1033798)
chr5 (16-217)||(1071326-1071527)
chr5 (16-218)||(1065598-1065800)
chr5 (15-222)||(1053237-1053444)
chr5 (18-218)||(1640760-1640960)
chr5 (17-221)||(1058503-1058707)
chr5 (17-207)||(1046577-1046767)
chr5 (350-423)||(1065384-1065457)
chr5 (356-423)||(1052984-1053051)
chr5 (356-422)||(1046325-1046391)
chr5 (350-423)||(1071123-1071196)
chr5 (356-421)||(1058322-1058387)
chr5 (157-237)||(1041528-1041607)
chr5 (356-418)||(1641080-1641142)
[»] chr3 (3 HSPs)
chr3 (29-286)||(44171262-44171521)
chr3 (29-286)||(44191558-44191817)
chr3 (19-103)||(54102841-54102925)


Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Complemental strand, 1044185 - 1043774
Alignment:
Q  16 caaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1044185 caaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccaaaggaaatcgacaacgattctcgagggatcc 1044086  T
Q  116 accgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1044085 accgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatt 1043986  T
Q  216 tgcaccacattgattatgttaggagatttaaaaaatgtccttgtgctttaaagcaacaaatagtcatgtttctgaaaaaatatcaatattgtactatggt 315  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1043985 tgcaccacattgattatgttaggagatttgaaaaatgtccttgtgctttaaagcaacaaatagtcatgtttctgaaaaaatatcaatattgtactatggc 1043886  T
Q  316 atttttcaattttagacaaaatttgtaaaaacctgtaaacttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1043885 atttttcaattttagacaaaatttgtaaaaacctgtaaacttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatt 1043786  T
Q  416 tcatctgtgctt 427  Q
    ||||||||||||    
T  1043785 tcatctgtgctt 1043774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 423
Target Start/End: Complemental strand, 1033798 - 1033386
Alignment:
Q  16 caaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatcc 115  Q
    |||||||||||| ||||||||||||| | ||||||||||||||||||||||| || |||||||||||||  | |||||||||||||||||| ||||||||    
T  1033798 caaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctcaagggatcc 1033699  T
Q  116 accgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatt 215  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |||||    
T  1033698 accatattcatctgttctatcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaagttcaacaccatcaaaacctgcaatt 1033599  T
Q  216 tgcaccacattgattatgttaggagatttaaaaaatgtcc--ttgtgctttaaagcaacaaatagtcatgtttctgaaaaaatatcaatattgtactatg 313  Q
    |||| ||||||||  |||||||  |||||  |||||||||   ||  |||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  1033598 tgcatcacattgagcatgttagttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcctgtttctg-aaaaatatcaatattgtactatg 1033500  T
Q  314 gt------atttttcaattttagacaaaatttgtaaaaacctgtaaacttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatat 407  Q
     |      |  ||||   ||| ||  ||||||||| | | |   ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||    
T  1033499 attgaatcacatttc--gtttggaataaatttgtacagatccacaaacttaccagcttcaatagcatttcttgcagcgagtctgaagtcatttacaatat 1033402  T
Q  408 gaggaatttcatctgt 423  Q
     |||||||||||||||    
T  1033401 taggaatttcatctgt 1033386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 1071527 - 1071326
Alignment:
Q  16 caaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatcc 115  Q
    |||||||||||| ||| ||||||||| | |||| ||||||||||||  |||| |||||||||||||||| || ||| |||||||| ||||| ||||||||    
T  1071527 caaaaggtgataatcttattccaactctttctgttcctatctcatttgcaacagcttcaacaacttccaaagcaaaccgacaacggttctcaagggatcc 1071428  T
Q  116 accgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatt 215  Q
    ||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||    
T  1071427 accatactcatctgtcctgtcattcactttatctttcatgaattgttcaaggaggtagccatgagctccatggatttcaaccccatcaaatcctgcaatt 1071328  T
Q  216 tg 217  Q
    ||    
T  1071327 tg 1071326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 1065800 - 1065598
Alignment:
Q  16 caaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatcc 115  Q
    |||||||||||| ||| ||||||||| | |||||||||||||||||  |||| |||||||||||||||| || ||||||||| || ||||| || || ||    
T  1065800 caaaaggtgataatcttattccaactctttctgctcctatctcatttgcaacagcttcaacaacttccaaagcaaatcgacagcggttctccagagaccc 1065701  T
Q  116 accgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatt 215  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||    
T  1065700 accatattcatctgtcctgtcattcactttatctttcatgaattgctcaaggaggtagccatgagctccatggatttcaaccccatcaaatcctgcaatt 1065601  T
Q  216 tgc 218  Q
    |||    
T  1065600 tgc 1065598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 1053444 - 1053237
Alignment:
Q  15 tcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatc 114  Q
    ||||||||||||| | | ||||||||| | ||||| |||||||||||  |||| |||||||||| ||||| |  ||||| ||||||||| || |||| ||    
T  1053444 tcaaaaggtgataattttattccaactctttctgcacctatctcatttgcaacagcttcaacaatttccaaaacaaatctacaacgattttcaagggttc 1053345  T
Q  115 caccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaat 214  Q
    |||| ||||||||||||||||| ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  1053344 caccatattcatctgttctgtcgtttgctttatctttcatgaattgttcaactaggtagccatgagctccatggatttcaaccccatcaaaacctacaat 1053245  T
Q  215 ttgcacca 222  Q
    ||||||||    
T  1053244 ttgcacca 1053237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 1640760 - 1640960
Alignment:
Q  18 aaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccac 117  Q
    ||||| |||| ||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||| ||  ||||||||||| || || |||| |||||    
T  1640760 aaaggcgataatctaattccaactctttctgcacctatctcattcacaactgcttcaacaatttccaaagcgaatcgacaacggttttcaagggttccac 1640859  T
Q  118 cgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatttg 217  Q
    |||||| ||| |||| ||||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||||||||| |||||||    
T  1640860 cgtatttatcagttcggtcattcactttatctttcataaattgctcaagtaggtaaccgtgagccccatggatctcaactccatcaaaacctgcaatttg 1640959  T
Q  218 c 218  Q
    |    
T  1640960 c 1640960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 1058707 - 1058503
Alignment:
Q  17 aaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatcca 116  Q
    ||||||||||| ||||||||||  | ||||||| |||||||||||  |||| |||||||||||||||| |  ||  |||||||| ||||| |||||||||    
T  1058707 aaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatcca 1058608  T
Q  117 ccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaattt 216  Q
    || ||||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||| ||| |||||||||||||| |||||||| ||| ||||||    
T  1058607 ccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaattt 1058508  T
Q  217 gcacc 221  Q
    |||||    
T  1058507 gcacc 1058503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 1046767 - 1046577
Alignment:
Q  17 aaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatcca 116  Q
    ||||||||||||| | ||||||||| | || || || |||||||| ||||| |||||||||| ||||| |  ||||  |||||| || || || | ||||    
T  1046767 aaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttcca 1046668  T
Q  117 ccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaac 207  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  ||| ||| | |||||||| ||||||||||    
T  1046667 ccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtatccagtagccccacgaatttcaaccccatcaaaac 1046577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 350 - 423
Target Start/End: Complemental strand, 1065457 - 1065384
Alignment:
Q  350 gtaaacttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttcatctgt 423  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||    
T  1065457 gtaaagttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaatgttaggaatttcatctgt 1065384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 356 - 423
Target Start/End: Complemental strand, 1053051 - 1052984
Alignment:
Q  356 ttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttcatctgt 423  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| |||||    
T  1053051 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgt 1052984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 1046391 - 1046325
Alignment:
Q  356 ttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttcatctg 422  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||||    
T  1046391 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctg 1046325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 350 - 423
Target Start/End: Complemental strand, 1071196 - 1071123
Alignment:
Q  350 gtaaacttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttcatctgt 423  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |  ||||||||||||||    
T  1071196 gtaaagttaccagcttcaatagcatttcttgcagcgagtctgaagtcattgacaatgtttggaatttcatctgt 1071123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 356 - 421
Target Start/End: Complemental strand, 1058387 - 1058322
Alignment:
Q  356 ttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttcatct 421  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||  |  ||||||||||||    
T  1058387 ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatct 1058322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 1041607 - 1041528
Alignment:
Q  157 attgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatttgcaccacattgattatgttag 237  Q
    |||| ||||||||||||||||||| | ||||||||||| | ||||||||||||  |||||||||||||||||  |||||||    
T  1041607 attgctcaagtaggtagccatgagttgcatggatttcatc-ccatcaaaacctgaaatttgcaccacattgagcatgttag 1041528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 1641080 - 1641142
Alignment:
Q  356 ttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttca 418  Q
    ||||||||| | |||||||| ||||||||||||||||| |||||||| ||| |||||||||||    
T  1641080 ttaccagctgctatagcattccttgcagcaagtctgaagtcattgacgatacgaggaatttca 1641142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 29 - 286
Target Start/End: Original strand, 44171262 - 44171521
Alignment:
Q  29 tctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattcatct 128  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    ||| | ||| || ||||| ||||||||||| |||||||||    
T  44171262 tctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcatct 44171361  T
Q  129 gttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatttgcaccacattga 228  Q
    ||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||||||| ||||||||    
T  44171362 gttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaacctgcaatttgcatcacattga 44171461  T
Q  229 ttatgttaggagatttaaaaaatgtcc--ttgtgctttaaagcaacaaatagtcatgttt 286  Q
      ||||||   |||||  |||||||||   ||  ||||||||||||||||||||||||||    
T  44171462 gcatgttacttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcatgttt 44171521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 29 - 286
Target Start/End: Original strand, 44191558 - 44191817
Alignment:
Q  29 tctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattcatct 128  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    ||| | ||| || ||||| ||||||||||| |||||||||    
T  44191558 tctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcatct 44191657  T
Q  129 gttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatttgcaccacattga 228  Q
    ||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||||||| ||||||||    
T  44191658 gttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaacctgcaatttgcatcacattga 44191757  T
Q  229 ttatgttaggagatttaaaaaatgtcc--ttgtgctttaaagcaacaaatagtcatgttt 286  Q
      ||||||   |||||  |||||||||   ||  ||||||||||||||||||||||||||    
T  44191758 gcatgttacttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcatgttt 44191817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 54102841 - 54102925
Alignment:
Q  19 aaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgatt 103  Q
    ||||||| |||||||  |||||||| || ||||| |||||||  ||||||||||  ||||| || ||||| || |||||||||||    
T  54102841 aaggtgaaagtctaacaccaactttgtcagctccaatctcatcaacaactgctttcacaacctctagagggaagcgacaacgatt 54102925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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