View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11440_low_5 (Length: 317)
Name: NF11440_low_5
Description: NF11440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11440_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 105 - 301
Target Start/End: Original strand, 2500673 - 2500873
Alignment:
| Q |
105 |
atgcaaccttaggtaatagttcaccattttacactagacgtaatttttgtgtggaaaggtttaggaatttgta----gctaagaaaaataattattttct |
200 |
Q |
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| T |
2500673 |
atgcaaccttaggtaatagttcaccattttacactagacgtaatttttgtgtggaaaggtttaggaatttgtacgtagctaagaaaaataattattttct |
2500772 |
T |
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| Q |
201 |
tagcgtaatcgtttgataaaaaatgagatcattgtcatagacgcaagtaagttatagtatcatctttttgacaaaatatacaatgaataaaccaagcaaa |
300 |
Q |
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| T |
2500773 |
tagcgtaatcgtttgataaaaaatgagatcattgtcatagacgcaagtaagttataataccatcttttcgacaaaatatacaatgaataaaccaaacaaa |
2500872 |
T |
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| Q |
301 |
c |
301 |
Q |
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| T |
2500873 |
c |
2500873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2500569 - 2500643
Alignment:
| Q |
1 |
aacaatgttaatatgggtttcctagttaccctgagactataaataccattacaagtctttagtcatctctattga |
75 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2500569 |
aacaatgttaatatgggttgcctagttaccctgagactataaataccattacaagtctttagtcatctctattga |
2500643 |
T |
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