View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11440_low_6 (Length: 304)
Name: NF11440_low_6
Description: NF11440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11440_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 51458908 - 51459195
Alignment:
| Q |
1 |
aatgcatttttgatgtagataccagtccaaaaggtcattggttgagtcaacatgtttaatatgttccgtatcaaatttgaagtttacaaggcagtccttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458908 |
aatgcatttttgatgtagataccagtccaaaaggtcattggttgagtcaacatgtttaatatgttccgtatcaaatttgaagtttacaaggcagtccttg |
51459007 |
T |
|
| Q |
101 |
ctgtttattttcttgaatgagatatcctttggtaatgtaggttattgaccccattcatgatcagaccatttatctgactatggagcataagatgaaactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51459008 |
ctgtttattttcttgaatgagatatcctttggtaatgtaggttattgaccccattcatgatcagaccatttatctgactatggagcataagatgaaactt |
51459107 |
T |
|
| Q |
201 |
aagaaagagtatggttagtaatatttataaacgttcctttgttgtttgtggatgaactagtttgatcatttaaatggcaccactttgt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51459108 |
aagaaagagtatggttagtaatatttataaacgttcctttgttgtttgtggatggactagtttgatcatttaaatggcaccactttgt |
51459195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 51485390 - 51485492
Alignment:
| Q |
126 |
cctttggtaatgtaggttattgaccccattcatgatcagaccatttatctgactatggagcataagatgaaacttaagaaagagtatggttagtaatatt |
225 |
Q |
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|
||||||||||||||||||||| | ||||| ||||| |||||| ||||||||||| |||||||||| |||||||||| | |||||||||||||||| || |
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| T |
51485390 |
cctttggtaatgtaggttattcatcccatccatgaccagaccttttatctgactcgagagcataagaggaaacttaaggaggagtatggttagtaatgtt |
51485489 |
T |
|
| Q |
226 |
tat |
228 |
Q |
| |
|
||| |
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|
| T |
51485490 |
tat |
51485492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 51505523 - 51505626
Alignment:
| Q |
125 |
tcctttggtaatgtaggttattgaccccattcatgatcagaccatttatctgactatggagcataagatgaaacttaagaaagagtatggttagtaatat |
224 |
Q |
| |
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|||||||||||||||||||||| ||||||| ||||||||| | ||||| ||||||| |||||||||| || |||||| | ||||||||||||| || | |
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| T |
51505523 |
tcctttggtaatgtaggttattcaccccatccatgatcagcacttttatttgactatcgagcataagaagaggcttaaggaggagtatggttagttatgt |
51505622 |
T |
|
| Q |
225 |
ttat |
228 |
Q |
| |
|
|||| |
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|
| T |
51505623 |
ttat |
51505626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 30200903 - 30200803
Alignment:
| Q |
127 |
ctttggtaatgtaggttattgaccccattcatgatcagaccatttatctgactatggagcataagatgaaacttaagaaagagtatggttagtaatattt |
226 |
Q |
| |
|
||||| || |||||||| || ||||||| ||||||||||| ||||| ||||||| |||||||| | || |||||| | |||||||||||||||| ||| |
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|
| T |
30200903 |
ctttgatattgtaggttgttcaccccatccatgatcagacattttatttgactatcgagcataaaaagaggcttaaggaggagtatggttagtaatcttt |
30200804 |
T |
|
| Q |
227 |
a |
227 |
Q |
| |
|
| |
|
|
| T |
30200803 |
a |
30200803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 108 - 252
Target Start/End: Original strand, 43163065 - 43163209
Alignment:
| Q |
108 |
ttttcttgaatgagatatcctttggtaatgtaggttattgaccccattcatgatcagaccatttatctgactatggagcataagatgaaacttaagaaag |
207 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
43163065 |
ttttcttgaaagagatatccttcggtaatgtaggttattgaccccattcatgatcagaccatttatctgactatggagcataagatgaaacttaaggagg |
43163164 |
T |
|
| Q |
208 |
agtatggttagtaatatttataaacgttcctttgttgtttgtgga |
252 |
Q |
| |
|
|||| |||||||| |||||||||| || ||||||||||| |||| |
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|
| T |
43163165 |
agtaaggttagtagtatttataaatatttctttgttgtttatgga |
43163209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 27399850 - 27399945
Alignment:
| Q |
125 |
tcctttggtaatgtaggttattgaccccattcatgatcagaccatttatctgactatggagcataagatgaaacttaagaaagagtatggttagta |
220 |
Q |
| |
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|||||||| | | ||||||||| ||||||| |||||||||||| ||||||| || || | |||||||| || |||||| | ||||| |||||||| |
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| T |
27399850 |
tcctttggcattataggttattcaccccatccatgatcagaccttttatctaaccattgggcataagaaaaagcttaaggaggagtacggttagta |
27399945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 20866638 - 20866568
Alignment:
| Q |
110 |
ttcttgaatgagatatcctttggtaatgtaggttattgaccccattcatgatcagaccatttatctgacta |
180 |
Q |
| |
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||||||||||| ||| | | |||||||||||||||| ||||||| ||||||||||| ||||||| |||| |
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| T |
20866638 |
ttcttgaatgacgtattcatcggtaatgtaggttattcaccccatccatgatcagacgttttatcttacta |
20866568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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