View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11440_low_7 (Length: 273)
Name: NF11440_low_7
Description: NF11440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11440_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 5343840 - 5343630
Alignment:
| Q |
7 |
ggagaagcagagagaaagctatcagctccaagaatctttttccgaaaggattcaacttcaactggataagtcccttctttctcaagatcagtgttcaaca |
106 |
Q |
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| T |
5343840 |
ggagaagcaaagagaaagctatcagctccaagaatctttttccgaaaggattcaacttcaactggataagtcccttctttctcaagatcagtgttcaaca |
5343741 |
T |
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| Q |
107 |
atggtagatttgaaatattaacatattcaatatgaacaccctcaacatttttgctcaactcaatagctaccatcatcaataatcaataataaaaaataat |
206 |
Q |
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| T |
5343740 |
atggtagatttgaaatattaacatattcaatatgaacaccctccacatttttgctcaactcaatagctaccatcatcaataatcaataataaaaaataat |
5343641 |
T |
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| Q |
207 |
taatgcttcct |
217 |
Q |
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|||| |||||| |
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| T |
5343640 |
taatacttcct |
5343630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 5351625 - 5351452
Alignment:
| Q |
7 |
ggagaagcagagagaaagctatcagctccaagaatctttttccgaaaggattcaacttcaactggataagtcccttctttctcaagatcagtgttcaaca |
106 |
Q |
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||||||||| |||||| |||||||| |||||||||||| ||||| | |||||||||| ||||| || |||||||| |||| |||||||||||||||| |
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| T |
5351625 |
ggagaagcaaagagaacactatcagcagcaagaatcttttgacgaaaagcttcaacttcagctggaaaattcccttctatctctagatcagtgttcaaca |
5351526 |
T |
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| Q |
107 |
atggtagatttgaaatattaacatattcaatatgaacaccctca---acatttttgctcaactcaatagctacc |
177 |
Q |
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| T |
5351525 |
ttggtaaagttgaaatatcaatgtactcaatatcaacaccctcaaccacatttttgctcagctcaatcgctacc |
5351452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 5339439 - 5339556
Alignment:
| Q |
7 |
ggagaagcagagagaaagctatcagctccaagaatctttttccgaaaggattcaacttcaactggataagtcccttctttctcaagatcagtgttcaaca |
106 |
Q |
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||||||||| | ||||||||||||||||||||||| | | ||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||| |
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| T |
5339439 |
ggagaagcaaatagaaagctatcagctccaagaatataatcacgaaaatcttcaacttcaagaggaaaagtcccttcttcctcaagatcagtgttcaaca |
5339538 |
T |
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| Q |
107 |
atggtagatttgaaatat |
124 |
Q |
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|||| | ||| ||||||| |
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| T |
5339539 |
atggcaaattcgaaatat |
5339556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 5325495 - 5325594
Alignment:
| Q |
7 |
ggagaagcagagagaaagctatcagctccaagaatctttttccgaaaggattcaacttcaactggataagtcccttctttctcaagatcagtgttcaaca |
106 |
Q |
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||||||||| |||||| ||||||||| |||||||||| | ||||| | |||||||||| | ||| |||| |||||||||||||||||||||||||||| |
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| T |
5325495 |
ggagaagcaaagagaacactatcagcttcaagaatcttatgacgaaatgcttcaacttcagcaggaaaagttccttctttctcaagatcagtgttcaaca |
5325594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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